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PDBsum entry 3dbu

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Cleft analysis for: 3dbu PDB id
3dbu
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 2065.08 2.09 60.54 7 12.29 1 14.19 1 6 5 5 2 4 7 0  
2 987.19 0.00 70.13 2 10.14 2 8.76 3 4 3 5 8 4 2 0 D8W 301[A] (18 atoms)
3 685.12 0.00 60.35 8 5.07 8 11.10 2 5 0 1 3 5 1 0  
4 851.34 0.00 64.87 5 6.79 6 8.08 5 5 4 6 6 1 2 0  
5 544.22 0.00 50.26 10 5.61 7 8.56 4 2 2 2 3 0 4 0  
6 426.94 0.00 75.16 1 7.93 4 7.78 7 4 1 2 2 1 4 0  
7 495.70 0.00 56.78 9 4.67 9 6.59 8 3 2 1 2 0 4 0  
8 512.58 0.00 66.15 4 7.89 5 5.88 10 4 2 4 3 2 3 0  
9 385.59 0.00 66.70 3 10.02 3 7.89 6 1 2 5 2 2 1 0  
10 329.91 0.00 63.70 6 4.13 10 6.24 9 2 4 4 1 0 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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