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PDBsum entry 3dbd
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Tunnel analysis for: 3dbd calculated with  MOLE 2.0
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PDB id
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3dbd
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.94 |
2.07 |
15.3 |
1.13 |
0.35 |
7.8 |
69 |
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2 |
0 |
0 |
3 |
1 |
0 |
2 |
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3FR 313 A
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2 |
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2.14 |
3.95 |
16.3 |
0.13 |
-0.12 |
14.9 |
79 |
2 |
1 |
0 |
6 |
0 |
0 |
0 |
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3 |
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2.14 |
3.93 |
16.3 |
-0.94 |
-0.39 |
25.0 |
84 |
1 |
3 |
0 |
5 |
0 |
0 |
0 |
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4 |
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1.24 |
2.55 |
17.3 |
0.50 |
0.00 |
12.7 |
81 |
2 |
1 |
0 |
7 |
0 |
0 |
0 |
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5 |
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1.25 |
2.69 |
17.3 |
-0.45 |
-0.24 |
21.6 |
86 |
1 |
3 |
0 |
6 |
0 |
0 |
0 |
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6 |
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1.88 |
2.07 |
18.4 |
0.26 |
0.01 |
11.9 |
72 |
2 |
1 |
1 |
3 |
1 |
0 |
2 |
3FR 313 A
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7 |
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1.83 |
1.83 |
20.0 |
0.17 |
-0.04 |
16.1 |
80 |
3 |
1 |
0 |
7 |
1 |
0 |
0 |
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8 |
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1.82 |
1.82 |
20.0 |
-0.66 |
-0.25 |
24.0 |
84 |
2 |
3 |
0 |
6 |
1 |
0 |
0 |
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9 |
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1.93 |
2.21 |
27.7 |
0.31 |
0.25 |
14.6 |
69 |
3 |
0 |
0 |
4 |
1 |
0 |
2 |
3FR 313 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program