PDBsum entry 3dap Go to PDB code:  Tunnel analysis for: 3dap calculated with MOLE 2.0 PDB id 3dap Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.08 2.30 22.3 -2.15 0.19 25.4 76 5 2 1 0 3 0 0  DA3 950 B 2 1.77 1.93 28.1 -2.08 -0.73 18.2 87 4 3 3 0 1 0 0  NDP 901 B DA3 950 B 3 1.56 1.72 29.2 -2.29 -0.73 18.6 87 3 3 3 0 1 0 0  NDP 901 B DA3 950 B 4 1.29 1.36 20.6 -0.36 -0.40 8.0 89 0 2 3 4 1 0 0  NDP 401 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.