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PDBsum entry 3d94

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protein ligands metals links
Transferase PDB id
3d94

 

 

 

 

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Contents
Protein chain
289 a.a. *
Ligands
D94
Metals
_CA
Waters ×159
* Residue conservation analysis
PDB id:
3d94
Name: Transferase
Title: Crystal structure of the insulin-like growth factor-1 receptor kinase in complex with pqip
Structure: Insulin-like growth factor 1 receptor beta chain. Chain: a. Fragment: protein kinase domain. Synonym: insulin-like growth factor i receptor, igf-i receptor, cd221 antigen. Engineered: yes
Source: Homo sapiens. Human. Gene: igf1r. Expressed in: spodoptera frugiperda.
Resolution:
2.30Å     R-factor:   0.200     R-free:   0.236
Authors: J.Wu,W.Li,W.T.Miller,S.R.Hubbard
Key ref: J.Wu et al. (2008). Small-molecule inhibition and activation-loop trans-phosphorylation of the IGF1 receptor. Embo J, 27, 1985-1994. PubMed id: 18566589 DOI: 10.1038/emboj.2008.116
Date:
26-May-08     Release date:   29-Jul-08    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P08069  (IGF1R_HUMAN) -  Insulin-like growth factor 1 receptor from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1367 a.a.
289 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1038/emboj.2008.116 Embo J 27:1985-1994 (2008)
PubMed id: 18566589  
 
 
Small-molecule inhibition and activation-loop trans-phosphorylation of the IGF1 receptor.
J.Wu, W.Li, B.P.Craddock, K.W.Foreman, M.J.Mulvihill, Q.S.Ji, W.T.Miller, S.R.Hubbard.
 
  ABSTRACT  
 
The insulin-like growth factor-1 receptor (IGF1R) is a receptor tyrosine kinase (RTK) that has a critical role in mitogenic signalling during embryogenesis and an antiapoptotic role in the survival and progression of many human tumours. Here, we present the crystal structure of the tyrosine kinase domain of IGF1R (IGF1RK), in its unphosphorylated state, in complex with a novel compound, cis-3-[3-(4-methyl-piperazin-l-yl)-cyclobutyl]-1-(2-phenyl-quinolin-7-yl)-imidazo[1,5-a]pyrazin-8-ylamine (PQIP), which we show is a potent inhibitor of both the unphosphorylated (basal) and phosphorylated (activated) states of the kinase. PQIP interacts with residues in the ATP-binding pocket and in the activation loop, which confers specificity for IGF1RK and the highly related insulin receptor (IR) kinase. In this crystal structure, the IGF1RK active site is occupied by Tyr1135 from the activation loop of an symmetry (two-fold)-related molecule. This dimeric arrangement affords, for the first time, a visualization of the initial trans-phosphorylation event in the activation loop of an RTK, and provides a molecular rationale for a naturally occurring mutation in the activation loop of the IR that causes type II diabetes mellitus.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
20603078 E.Bergamin, P.T.Hallock, S.J.Burden, and S.R.Hubbard (2010).
The cytoplasmic adaptor protein Dok7 activates the receptor tyrosine kinase MuSK via dimerization.
  Mol Cell, 39, 100-109.
PDB code: 3ml4
20607231 X.Y.Chu, J.Tian, N.F.Wu, and Y.L.Fan (2010).
An intramolecular disulfide bond is required for the thermostability of methyl parathion hydrolase, OPHC2.
  Appl Microbiol Biotechnol, 88, 125-131.  
  19956424 M.Yin, X.Guan, Z.Liao, and Q.Wei (2009).
Insulin-like growth factor-1 receptor-targeted therapy for non-small cell lung cancer: a mini review.
  Am J Transl Res, 1, 101-114.  
19610618 R.Li, A.Pourpak, and S.W.Morris (2009).
Inhibition of the insulin-like growth factor-1 receptor (IGF1R) tyrosine kinase as a novel cancer therapy approach.
  J Med Chem, 52, 4981-5004.  
18946488 D.Komander, R.Garg, P.T.Wan, A.J.Ridley, and D.Barford (2008).
Mechanism of multi-site phosphorylation from a ROCK-I:RhoE complex structure.
  EMBO J, 27, 3175-3185.
PDB code: 2v55
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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