PDBsum entry 3d7t Go to PDB code:  Pore analysis for: 3d7t calculated with MOLE 2.0 PDB id 3d7t Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.74 2.33 29.8 -2.08 -0.67 23.6 88 2 3 3 3 0 0 0   2 1.41 1.42 32.0 -1.13 -0.25 17.1 84 2 5 2 2 2 0 0   3 1.16 1.59 50.5 0.62 0.00 10.0 83 2 5 2 8 2 0 0  STU 6335 A 4 1.09 2.89 53.0 1.19 0.32 9.2 81 2 2 1 15 3 0 0  STU 6335 A 5 1.33 1.34 58.5 -1.17 -0.37 15.9 84 3 6 3 4 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.