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PDBsum entry 3d2f
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Pore analysis for: 3d2f calculated with  MOLE 2.0
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PDB id
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3d2f
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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23 pores,
coloured by radius |
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23 pores,
coloured by radius
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23 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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4.33 |
4.78 |
33.8 |
-1.19 |
-0.44 |
10.1 |
87 |
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1 |
3 |
7 |
3 |
1 |
1 |
0 |
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2 |
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2.08 |
2.08 |
42.3 |
-2.01 |
-0.47 |
26.0 |
84 |
6 |
4 |
3 |
3 |
3 |
0 |
0 |
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3 |
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2.05 |
2.09 |
43.9 |
-1.65 |
-0.50 |
18.2 |
85 |
7 |
3 |
4 |
2 |
2 |
0 |
0 |
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4 |
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2.03 |
2.21 |
44.7 |
-2.46 |
-0.65 |
27.4 |
79 |
8 |
5 |
6 |
0 |
3 |
1 |
0 |
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5 |
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2.04 |
2.23 |
50.0 |
-1.99 |
-0.36 |
21.1 |
85 |
7 |
2 |
6 |
3 |
2 |
1 |
0 |
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6 |
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2.08 |
2.08 |
56.2 |
-1.59 |
-0.54 |
18.1 |
90 |
5 |
5 |
7 |
4 |
1 |
0 |
0 |
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7 |
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2.05 |
2.09 |
58.9 |
-2.17 |
-0.42 |
25.9 |
78 |
9 |
4 |
5 |
2 |
4 |
1 |
0 |
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8 |
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2.05 |
2.23 |
69.2 |
-2.08 |
-0.49 |
21.9 |
87 |
9 |
6 |
11 |
4 |
1 |
1 |
0 |
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9 |
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2.04 |
2.10 |
75.3 |
-1.33 |
-0.46 |
13.9 |
89 |
6 |
4 |
10 |
6 |
1 |
1 |
0 |
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10 |
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2.08 |
2.27 |
38.1 |
-2.34 |
-0.54 |
23.6 |
85 |
6 |
4 |
6 |
1 |
1 |
1 |
0 |
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11 |
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1.21 |
1.77 |
42.5 |
-0.97 |
-0.16 |
10.9 |
76 |
4 |
1 |
3 |
3 |
3 |
3 |
1 |
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12 |
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1.25 |
1.37 |
42.5 |
-1.01 |
-0.11 |
13.7 |
73 |
4 |
3 |
1 |
2 |
4 |
4 |
0 |
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13 |
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2.02 |
3.08 |
43.4 |
-2.38 |
-0.52 |
26.0 |
80 |
6 |
5 |
2 |
0 |
0 |
3 |
0 |
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14 |
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3.06 |
4.15 |
69.2 |
-1.56 |
-0.33 |
20.8 |
80 |
6 |
2 |
3 |
2 |
3 |
1 |
0 |
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15 |
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2.09 |
2.28 |
88.7 |
-1.70 |
-0.43 |
20.6 |
83 |
9 |
4 |
7 |
3 |
3 |
2 |
0 |
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16 |
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2.11 |
2.27 |
91.5 |
-2.06 |
-0.58 |
19.0 |
86 |
10 |
4 |
6 |
1 |
2 |
0 |
0 |
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17 |
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2.11 |
2.27 |
100.8 |
-2.38 |
-0.51 |
25.3 |
80 |
12 |
6 |
3 |
2 |
3 |
0 |
0 |
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18 |
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1.44 |
1.80 |
104.2 |
-1.47 |
-0.24 |
18.3 |
77 |
11 |
6 |
6 |
4 |
5 |
6 |
1 |
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19 |
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2.04 |
3.80 |
106.3 |
-2.36 |
-0.44 |
27.0 |
82 |
12 |
9 |
10 |
2 |
2 |
2 |
0 |
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20 |
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1.14 |
2.07 |
120.4 |
-2.21 |
-0.48 |
22.8 |
82 |
12 |
10 |
9 |
6 |
2 |
4 |
0 |
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21 |
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1.23 |
1.21 |
128.2 |
-1.36 |
-0.29 |
20.8 |
83 |
13 |
7 |
6 |
9 |
2 |
4 |
0 |
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22 |
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1.28 |
1.72 |
142.2 |
-1.73 |
-0.33 |
19.5 |
79 |
17 |
8 |
12 |
5 |
6 |
7 |
1 |
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23 |
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1.17 |
1.28 |
35.8 |
-0.71 |
-0.05 |
12.0 |
72 |
3 |
3 |
1 |
2 |
5 |
3 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program