PDBsum entry 3d1n Go to PDB code:  Tunnel analysis for: 3d1n calculated with MOLE 2.0 PDB id 3d1n Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.30 21.2 1.50 0.22 2.4 80 1 0 1 6 2 0 0  DA 1 A DG 2 A 2 1.23 1.29 22.6 2.23 0.59 0.8 82 0 0 1 5 2 0 0  DA 1 A DG 2 A 3 1.22 1.31 23.0 1.75 0.31 1.3 79 0 0 1 5 2 0 0  DA 1 A DG 2 A DC 3 A 4 1.26 1.29 29.6 1.56 0.45 5.5 78 1 1 1 6 2 1 0  DA 1 C DG 2 C 5 1.44 3.04 19.4 1.36 0.68 3.9 62 0 2 0 3 4 0 0  MSE 267 O 6 1.46 3.13 27.3 0.47 0.44 10.1 67 1 3 1 3 4 1 0  MSE 267 O 7 1.36 1.47 16.1 0.56 0.39 5.9 67 1 1 1 3 3 0 0  MSE 267 M 8 1.31 2.46 17.8 1.01 0.59 4.5 66 1 1 1 3 4 0 0  MSE 267 M Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.