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PDBsum entry 3d0n

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Top Page protein ligands metals Protein-protein interface(s) clefts links
Cleft analysis for: 3d0n PDB id
3d0n
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 8735.77 3.72 67.53 3 13.65 1 21.70 1 18 15 41 18 12 24 0 GOL 264[B] (6 atoms)
2 2345.20 0.00 63.65 7 9.02 5 12.84 2 9 3 10 9 4 8 1  
3 1934.30 0.00 66.14 4 8.51 6 9.70 5 7 3 9 11 7 3 0 ACT 263[A] (4 atoms)
4 1771.03 0.00 63.96 6 8.05 8 10.21 4 8 3 9 11 7 3 0 ACT 263[B] (4 atoms)
5 869.06 0.00 62.39 8 7.66 9 11.03 3 4 1 5 6 2 2 1  
6 773.30 0.00 55.47 10 5.77 10 8.18 9 4 1 3 4 4 1 0  
7 911.25 0.00 66.10 5 8.32 7 6.89 10 4 3 6 5 2 4 0  
8 636.19 0.00 70.79 2 9.19 3 8.74 6 6 2 1 4 0 3 0  
9 713.81 0.00 62.23 9 9.51 2 8.19 8 3 1 2 4 2 4 1  
10 574.59 0.00 70.88 1 9.03 4 8.53 7 5 2 1 5 0 3 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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