PDBsum entry 3cx5 Go to PDB code:  Tunnel analysis for: 3cx5 calculated with MOLE 2.0 PDB id 3cx5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.26 128.0 -0.25 0.01 12.2 80 13 1 8 19 4 7 0  6PH 4013 A HEM 4002 C 9PE 4011 C CN5 4033 C 2 1.20 1.28 137.3 -0.32 -0.02 12.9 83 15 2 10 19 4 3 0  6PH 4013 A HEM 4002 C 9PE 4011 C CN5 4033 C 3 1.25 1.26 25.6 -0.61 0.02 6.9 78 2 1 2 4 2 1 0   4 1.39 1.81 19.0 0.91 0.34 1.7 61 0 0 1 4 5 2 0   5 1.27 1.28 26.2 -0.80 0.03 8.3 79 2 1 3 4 2 1 0   6 1.16 2.16 17.1 -0.07 -0.05 6.3 76 0 2 2 2 3 0 0   7 1.08 1.29 18.5 -0.01 -0.05 9.2 98 1 0 3 1 1 0 0   8 1.24 1.33 15.5 1.13 0.81 1.4 72 0 0 1 4 5 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.