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PDBsum entry 3cpw
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Tunnel analysis for: 3cpw calculated with  MOLE 2.0
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PDB id
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3cpw
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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27 tunnels,
coloured by tunnel radius |
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27 tunnels,
coloured by
tunnel radius
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27 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.19 |
115.4 |
-0.42 |
-0.69 |
4.8 |
83 |
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1 |
3 |
3 |
3 |
0 |
1 |
0 |
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U 624 0 U 625 0 U 626 0 A 628 0 A 632 0 C 633 0 G
634 0 C 764 0 G 765 0 G 901 0 G 956 0 A 957 0 C
1044 0 G 1045 0 G 1046 0 U 1047 0 G 1048 0 C 1049
0 G 1050 0 C 1051 0 G 1052 0 G 1055 0 A 1058 0 G
1059 0 C 1060 0 C 1061 0 U 1062 0 A 1358 0 U 1359
0 C 1360 0 A 2101 0 G 2481 0 G 2482 0 A 2483 0 C
2533 0 U 2535 0 G 2537 0 NA 8542 0 A 3077 9 U
3079 9 A 3080 9 C 3081 9 A 3093 9 G 3094 9 C 3095
9
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2 |
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1.24 |
1.46 |
119.7 |
-0.44 |
-0.58 |
7.5 |
77 |
5 |
1 |
1 |
3 |
2 |
1 |
0 |
A 114 0 U 115 0 G 116 0 A 117 0 G 118 0 A 119 0 A
131 0 A 132 0 C 764 0 G 765 0 A 766 0 U 768 0 C
769 0 C 770 0 G 771 0 G 772 0 A 773 0 C 774 0 A
867 0 G 868 0 G 869 0 G 887 0 U 888 0 C 889 0 A
895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 C 1462 0
A 1463 0 U 1464 0 C 1474 0 G 1475 0 G 1481 0 A
2101 0 A 2479 0 G 2480 0 SR 8957 0
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3 |
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1.19 |
1.43 |
121.0 |
-0.49 |
-0.65 |
6.5 |
96 |
3 |
0 |
5 |
3 |
0 |
1 |
0 |
U 645 0 G 646 0 G 752 0 U 753 0 G 754 0 G 755 0 A
756 0 C 757 0 A 761 0 C 762 0 C 763 0 C 764 0 G
765 0 A 766 0 A 895 0 C 896 0 A 897 0 C 1277 0 U
1279 0 G 1299 0 G 1300 0 A 1348 0 G 1349 0 U 1350
0 G 1351 0 C 1353 0 U 1359 0 C 1360 0 A 2101 0 A
2479 0 G 2480 0 SR 8914 0
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4 |
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1.20 |
1.45 |
123.9 |
-0.25 |
-0.69 |
3.4 |
85 |
1 |
0 |
1 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 628 0 A 632 0 C 633 0 G
634 0 C 764 0 G 765 0 G 901 0 A 914 0 C 915 0 A
929 0 C 930 0 A 943 0 G 944 0 U 945 0 C 946 0 U
947 0 G 948 0 U 949 0 G 950 0 A 1013 0 A 1014 0 C
1015 0 U 1017 0 A 1018 0 C 1019 0 C 1044 0 G 1045
0 G 1046 0 U 1062 0 G 1063 0 U 1064 0 G 1065 0 U
1066 0 A 1358 0 U 1359 0 C 1360 0 A 2101 0 C 2393
0 G 2481 0 G 2482 0 A 2483 0 C 2533 0 U 2535 0 G
2537 0 NA 8542 0 G 3102 9
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5 |
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1.20 |
1.45 |
125.4 |
-0.60 |
-0.60 |
9.2 |
83 |
6 |
2 |
1 |
4 |
1 |
1 |
0 |
U 134 0 G 135 0 C 764 0 G 765 0 A 766 0 U 768 0 C
769 0 C 770 0 G 771 0 G 772 0 A 773 0 C 774 0 A
867 0 G 868 0 G 869 0 G 887 0 U 888 0 C 889 0 A
895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 C 1462 0
A 1463 0 U 1464 0 A 1465 0 C 1466 0 C 1467 0 C
1472 0 U 1473 0 C 1474 0 G 1475 0 A 2101 0 A 2479
0 G 2480 0
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6 |
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1.20 |
1.40 |
128.2 |
-1.08 |
-0.69 |
12.4 |
86 |
5 |
3 |
4 |
2 |
0 |
1 |
0 |
U 645 0 G 646 0 U 647 0 G 648 0 U 649 0 A 665 0 A
666 0 C 667 0 U 675 0 C 676 0 G 678 0 G 679 0 G
680 0 G 681 0 A 750 0 U 751 0 U 753 0 G 755 0 A
756 0 C 757 0 A 761 0 C 762 0 C 763 0 C 764 0 G
765 0 A 766 0 A 895 0 C 896 0 A 897 0 U 1359 0 C
1360 0 A 2101 0 A 2479 0 G 2480 0 SR 8914 0 SR
8915 0
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7 |
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1.20 |
1.42 |
125.8 |
-0.36 |
-0.71 |
4.9 |
82 |
1 |
2 |
1 |
3 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 628 0 A 632 0 C 633 0 G
634 0 C 764 0 G 765 0 G 901 0 G 911 0 A 913 0 A
914 0 C 915 0 C 930 0 C 931 0 A 943 0 C 1026 0 G
1027 0 U 1028 0 U 1030 0 G 1031 0 A 1032 0 C 1033
0 C 1044 0 G 1045 0 G 1046 0 U 1062 0 G 1063 0 U
1064 0 G 1065 0 U 1066 0 A 1067 0 C 1068 0 A 1287
0 U 1288 0 C 1289 0 A 1358 0 U 1359 0 C 1360 0 A
2101 0 G 2481 0 G 2482 0 A 2483 0 C 2533 0 U 2535
0 G 2537 0 NA 8542 0
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8 |
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1.34 |
1.51 |
128.9 |
-0.76 |
-0.66 |
10.2 |
82 |
5 |
3 |
1 |
2 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 U 866 0 A 867 0 G 868 0 G
869 0 G 887 0 U 888 0 C 889 0 A 895 0 C 896 0 A
897 0 U 1359 0 C 1360 0 A 1459 0 G 1460 0 U 1461
0 C 1474 0 G 1475 0 A 1476 0 C 1477 0 U 1478 0 A
1479 0 C 1862 0 G 1863 0 C 1872 0 A 2101 0 G 2249
0 G 2250 0 A 2479 0 G 2480 0 SR 8977 A
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9 |
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1.20 |
1.42 |
127.5 |
-0.66 |
-0.69 |
7.0 |
87 |
3 |
1 |
2 |
2 |
0 |
1 |
0 |
U 651 0 G 652 0 C 725 0 C 726 0 G 727 0 C 728 0 C
729 0 A 737 0 G 738 0 G 739 0 G 740 0 C 741 0 G
742 0 G 743 0 A 756 0 C 757 0 A 761 0 C 762 0 C
763 0 C 764 0 G 765 0 A 766 0 A 895 0 C 896 0 A
897 0 A 926 0 U 927 0 G 1036 0 G 1037 0 G 1038 0
G 1039 0 A 1040 0 U 1359 0 C 1360 0 A 2101 0 A
2479 0 G 2480 0 SR 8914 0
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10 |
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1.17 |
1.35 |
129.9 |
-0.41 |
-0.63 |
6.4 |
81 |
2 |
1 |
1 |
3 |
1 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 845 0 U
883 0 C 884 0 U 888 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 G 1837 0 A 2099 0 A 2100 0 A 2101
0 G 2102 0 A 2103 0 C 2477 0 U 2478 0 A 2479 0 G
2480 0 A 2486 0 C 2487 0 C 2496 0 A 2497 0 U 2527
0 U 2528 0 A 2538 0 G 2540 0 U 2541 0 C 2542 0 U
2590 0 C 2591 0 C 2608 0 U 2619 0 U 2620 0 A 2637
0 C 2644 0 U 2645 0 G 2646 0 ZLD 9500 0 ACE 78 4
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11 |
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1.36 |
1.55 |
130.9 |
-0.88 |
-0.70 |
11.5 |
84 |
3 |
5 |
2 |
2 |
0 |
1 |
0 |
U 214 0 U 651 0 G 652 0 G 661 0 A 682 0 G 683 0 G
684 0 C 685 0 A 686 0 C 687 0 G 689 0 G 690 0 G
742 0 A 756 0 C 757 0 A 761 0 C 762 0 C 763 0 C
764 0 G 765 0 A 766 0 A 895 0 C 896 0 A 897 0 A
926 0 U 927 0 G 1038 0 G 1039 0 A 1040 0 U 1359 0
C 1360 0 A 2101 0 A 2479 0 G 2480 0 NA 8536 0 SR
8914 0
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12 |
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1.19 |
1.38 |
130.6 |
-0.64 |
-0.69 |
8.1 |
85 |
5 |
1 |
2 |
2 |
0 |
1 |
0 |
G 118 0 A 119 0 A 120 0 U 123 0 C 124 0 U 125 0 C
764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 C 774 0 U 864 0 G 865 0 U
866 0 A 867 0 G 868 0 G 869 0 G 887 0 U 888 0 C
889 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G
1453 0 U 1454 0 C 1455 0 C 1456 0 G 1460 0 U 1461
0 C 1462 0 C 1474 0 G 1475 0 A 1482 0 C 1483 0 G
1484 0 A 1485 0 A 1486 0 A 2101 0 A 2479 0 G 2480
0
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13 |
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1.37 |
1.53 |
129.9 |
-0.62 |
-0.69 |
6.7 |
92 |
4 |
1 |
4 |
2 |
0 |
1 |
0 |
G 554 0 U 555 0 C 556 0 C 557 0 U 595 0 C 596 0 A
597 0 C 598 0 G 607 0 A 608 0 U 609 0 G 622 0 G
634 0 A 635 0 C 638 0 A 639 0 G 640 0 C 764 0 G
765 0 G 901 0 G 902 0 U 1320 0 A 1321 0 G 1323 0
G 1324 0 G 1325 0 U 1326 0 A 1331 0 C 1332 0 U
1333 0 A 1355 0 A 1356 0 A 1357 0 A 1358 0 U 1359
0 C 1360 0 A 2101 0 G 2537 0
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14 |
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1.20 |
1.38 |
131.5 |
-0.55 |
-0.61 |
6.5 |
83 |
3 |
1 |
2 |
2 |
1 |
1 |
0 |
U 651 0 G 652 0 U 701 0 G 703 0 C 704 0 C 719 0 G
720 0 A 721 0 G 722 0 G 723 0 G 724 0 C 725 0 G
742 0 G 743 0 G 744 0 A 756 0 C 757 0 A 761 0 C
762 0 C 763 0 C 764 0 G 765 0 A 766 0 A 895 0 C
896 0 A 897 0 A 926 0 U 927 0 G 1036 0 G 1037 0 G
1038 0 G 1039 0 A 1040 0 U 1359 0 C 1360 0 A 2101
0 A 2479 0 G 2480 0 SR 8914 0 SR 8926 0
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15 |
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1.19 |
1.38 |
135.5 |
-0.78 |
-0.64 |
10.1 |
84 |
6 |
1 |
1 |
2 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 G 868 0 G 869 0 G 887 0 U
888 0 C 889 0 A 895 0 C 896 0 A 897 0 U 1359 0 C
1360 0 G 1863 0 C 1864 0 A 1865 0 A 2101 0 C 2119
0 U 2120 0 G 2121 0 C 2122 0 A 2123 0 G 2124 0 G
2125 0 C 2126 0 G 2263 0 U 2265 0 A 2266 0 G 2267
0 C 2268 0 C 2269 0 G 2270 0 A 2479 0 G 2480 0
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16 |
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1.34 |
1.51 |
136.1 |
-0.60 |
-0.73 |
5.8 |
92 |
4 |
0 |
4 |
2 |
0 |
1 |
0 |
A 542 0 G 543 0 C 556 0 C 557 0 C 558 0 C 559 0 C
560 0 G 561 0 A 591 0 G 592 0 A 593 0 C 594 0 G
607 0 A 608 0 U 609 0 G 622 0 G 634 0 A 635 0 C
638 0 A 639 0 G 640 0 C 764 0 G 765 0 G 901 0 G
902 0 G 1093 0 U 1320 0 A 1321 0 G 1323 0 G 1324
0 G 1325 0 U 1326 0 A 1331 0 C 1332 0 U 1333 0 A
1355 0 A 1356 0 A 1357 0 A 1358 0 U 1359 0 C 1360
0 A 2101 0 G 2537 0
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17 |
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1.16 |
1.37 |
137.7 |
-0.37 |
-0.72 |
4.5 |
83 |
1 |
1 |
1 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 628 0 A 632 0 C 633 0 G
634 0 C 764 0 G 765 0 G 901 0 C 1044 0 G 1045 0 G
1046 0 U 1047 0 G 1048 0 C 1049 0 A 1058 0 G 1059
0 C 1060 0 C 1061 0 U 1062 0 G 1119 0 U 1120 0 C
1126 0 C 1127 0 U 1128 0 C 1129 0 U 1130 0 C 1228
0 C 1229 0 A 1231 0 A 1232 0 A 1236 0 U 1237 0 C
1238 0 A 1358 0 U 1359 0 C 1360 0 G 2068 0 A 2101
0 G 2481 0 G 2482 0 A 2483 0 U 2492 0 C 2493 0 G
2524 0 G 2525 0 C 2533 0 U 2535 0 G 2537 0 A 2776
0 G 2777 0 A 2792 0 MG 8002 0 MG 8018 0 NA 8542 0
C 3091 9 G 3092 9 A 3093 9
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18 |
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1.25 |
1.48 |
138.3 |
-0.95 |
-0.60 |
12.5 |
81 |
6 |
3 |
4 |
3 |
1 |
1 |
0 |
A 466 0 G 467 0 U 468 0 A 476 0 U 488 0 G 500 0 G
501 0 A 502 0 G 503 0 A 509 0 U 510 0 G 512 0 A
513 0 G 514 0 C 764 0 G 765 0 A 766 0 A 767 0 U
768 0 A 844 0 U 883 0 U 888 0 C 889 0 A 895 0 C
896 0 A 897 0 U 1359 0 C 1360 0 A 1427 0 C 1428 0
A 1689 0 A 2101 0 A 2479 0 G 2480 0 SR 8925 0
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19 |
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1.19 |
1.55 |
172.5 |
-0.42 |
-0.70 |
5.2 |
85 |
2 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 832 0 G
833 0 G 834 0 U 835 0 C 839 0 U 845 0 A 846 0 U
883 0 C 884 0 U 888 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 G 1751 0 C 1753 0 A 1821 0 A 1822
0 G 1823 0 C 1824 0 U 1825 0 C 1826 0 G 1827 0 G
1828 0 A 1829 0 G 1837 0 U 1838 0 G 1849 0 U 1850
0 G 1884 0 A 1885 0 A 1886 0 U 1887 0 C 1888 0 C
1889 0 U 1890 0 A 2011 0 G 2013 0 G 2014 0 A 2015
0 U 2016 0 U 2017 0 A 2018 0 A 2019 0 C 2020 0 C
2021 0 A 2022 0 G 2023 0 A 2024 0 C 2026 0 A 2100
0 A 2101 0 A 2103 0 C 2477 0 U 2478 0 A 2479 0 G
2480 0 G 2617 0 G 2643 0 C 2644 0 U 2645 0 G 2646
0 SR 8937 0 SR 8943 0 SR 8944 0 SR 8998 0
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20 |
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1.18 |
1.58 |
187.3 |
-0.47 |
-0.70 |
5.9 |
83 |
3 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 794 0 G
795 0 U 825 0 G 828 0 G 830 0 U 831 0 C 839 0 U
845 0 A 846 0 C 847 0 C 848 0 C 849 0 U 850 0 U
883 0 C 884 0 U 888 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 G 1378 0 A 1379 0 A 1407 0 A 1712
0 G 1713 0 G 1739 0 G 1756 0 U 1757 0 U 1758 0 A
1759 0 C 1762 0 C 1763 0 C 1764 0 G 1765 0 U 1766
0 G 1777 0 A 1778 0 G 1780 0 G 1781 0 G 1782 0 A
1783 0 U 1784 0 A 1811 0 A 1815 0 C 1816 0 U 1817
0 C 1818 0 G 1819 0 G 1837 0 U 1838 0 A 2100 0 A
2101 0 A 2103 0 C 2477 0 U 2478 0 A 2479 0 G 2480
0 C 2644 0 U 2645 0 G 2646 0 C 2752 0 SR 8937 0
SR 8965 0 SR 8971 0
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21 |
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1.17 |
1.59 |
188.4 |
-0.42 |
-0.72 |
5.1 |
85 |
2 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 A 788 0 C
789 0 U 825 0 A 827 0 G 828 0 A 829 0 G 830 0 U
831 0 C 839 0 U 845 0 A 846 0 C 847 0 C 848 0 C
849 0 U 850 0 U 883 0 C 884 0 U 888 0 A 895 0 C
896 0 A 897 0 U 1359 0 C 1360 0 A 1406 0 A 1407 0
U 1408 0 U 1488 0 G 1496 0 U 1505 0 U 1544 0 C
1545 0 G 1571 0 A 1572 0 C 1617 0 G 1618 0 G 1619
0 C 1620 0 G 1621 0 U 1635 0 G 1636 0 A 1641 0 A
1642 0 C 1643 0 A 1682 0 G 1695 0 U 1696 0 G 1697
0 U 1698 0 C 1699 0 C 1700 0 A 1701 0 G 1837 0 U
1838 0 A 2100 0 A 2101 0 A 2103 0 C 2477 0 U 2478
0 A 2479 0 G 2480 0 C 2644 0 U 2645 0 G 2646 0 NA
8569 0 SR 8937 0 SR 8941 0
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22 |
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1.17 |
1.59 |
192.7 |
-0.50 |
-0.70 |
5.3 |
89 |
3 |
1 |
3 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 825 0 G
828 0 G 830 0 U 831 0 C 839 0 U 845 0 A 846 0 C
847 0 C 848 0 C 849 0 U 850 0 U 883 0 C 884 0 U
888 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G
1378 0 A 1379 0 U 1380 0 A 1381 0 C 1403 0 C 1404
0 U 1405 0 A 1407 0 A 1712 0 G 1713 0 C 1714 0 C
1808 0 G 1809 0 G 1837 0 U 1838 0 A 2100 0 A 2101
0 A 2103 0 C 2477 0 U 2478 0 A 2479 0 G 2480 0 C
2644 0 U 2645 0 G 2646 0 C 2728 0 C 2729 0 G 2730
0 G 2731 0 U 2732 0 A 2741 0 G 2742 0 A 2743 0 G
2744 0 C 2745 0 A 2746 0 C 2747 0 G 2748 0 U 2749
0 G 2750 0 U 2866 0 G 2867 0 C 2868 0 A 2885 0 C
2886 0 MG 8017 0 NA 8569 0 SR 8937 0 SR 8942 0
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23 |
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1.40 |
1.40 |
16.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1166 0 G 1175 0 C 1176 0 G 1178 0 C 1179 0 U
1180 0 A 1181 0 A 1192 0 A 1193 0 A 1194 0 G 1195
0
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24 |
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1.13 |
1.13 |
30.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1166 0 G 1172 0 A 1173 0 G 1175 0 C 1176 0 A
1177 0 G 1178 0 C 1179 0 U 1180 0 A 1192 0 A 1193
0 A 1200 0 C 1201 0
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25 |
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1.27 |
1.50 |
26.2 |
-0.12 |
0.03 |
10.3 |
88 |
1 |
1 |
2 |
5 |
2 |
0 |
0 |
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26 |
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1.22 |
1.46 |
26.4 |
-0.34 |
-0.05 |
10.7 |
88 |
1 |
1 |
2 |
5 |
2 |
0 |
0 |
U 263 0 G 264 0
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 |
27 |
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1.41 |
1.41 |
19.9 |
-1.60 |
-0.68 |
19.2 |
95 |
2 |
1 |
1 |
0 |
0 |
0 |
0 |
G 964 0 A 965 0 U 966 0 U 967 0 G 968 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program