PDBsum entry 3cp9

Pore analysis for: 3cp9 calculated with

MOLE 2.0

PDB id

3cp9

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

1 pore, coloured by radius

7 pores, coloured by radius

7 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.38

3.05

28.6

-1.69

-0.41

29.0

80

2

4

1

1

1

0

0

2

2.09

3.34

30.9

0.89

0.22

12.6

77

2

3

1

7

1

0

2

C19 501 A

3

2.21

2.87

35.0

0.37

0.02

15.5

76

3

3

0

10

1

1

2

C19 502 B

4

1.69

3.11

37.3

0.10

0.15

15.7

76

4

3

0

6

1

0

1

C19 501 A

5

1.60

1.61

40.0

0.33

0.11

9.9

74

4

3

1

8

1

0

1

C19 502 B

6

2.58

2.97

47.3

-1.94

-0.40

26.5

74

5

6

2

2

2

1

0

7

2.10

3.10

55.1

0.20

-0.05

13.2

82

5

5

3

8

1

0

2

C19 501 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.