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PDBsum entry 3cig

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Immune system PDB id
3cig
Contents
Protein chain
663 a.a.
Ligands
NAG-NDG ×2
NAG-NAG-FUL
NAG-NAG ×2
NAG-NDG-MAN-BMA-
MAN
NAG-NDG-BMA-FUL
NAG ×4
FUC
Waters ×79

References listed in PDB file
Key reference
Title Structural basis of toll-Like receptor 3 signaling with double-Stranded RNA.
Authors L.Liu, I.Botos, Y.Wang, J.N.Leonard, J.Shiloach, D.M.Segal, D.R.Davies.
Ref. Science, 2008, 320, 379-381. [DOI no: 10.1126/science.1155406]
PubMed id 18420935
Abstract
Toll-like receptor 3 (TLR3) recognizes double-stranded RNA (dsRNA), a molecular signature of most viruses, and triggers inflammatory responses that prevent viral spread. TLR3 ectodomains (ECDs) dimerize on oligonucleotides of at least 40 to 50 base pairs in length, the minimal length required for signal transduction. To establish the molecular basis for ligand binding and signaling, we determined the crystal structure of a complex between two mouse TLR3-ECDs and dsRNA at 3.4 angstrom resolution. Each TLR3-ECD binds dsRNA at two sites located at opposite ends of the TLR3 horseshoe, and an intermolecular contact between the two TLR3-ECD C-terminal domains coordinates and stabilizes the dimer. This juxtaposition could mediate downstream signaling by dimerizing the cytoplasmic Toll interleukin-1 receptor (TIR) domains. The overall shape of the TLR3-ECD does not change upon binding to dsRNA.
Figure 1.
Fig. 1. dsRNA:TLR3 signaling complex. Mouse TLR3 ectodomains (green and cyan) form a dimer on the dsRNA (blue and red). The N glycans are shown (light green and light blue). (A) The N-and C-terminal binding sites. (B) Illustration of how the two C-terminal domains are brought together in the complex. Figures generated with PyMol (DeLano Scientific, San Carlos, CA).
Figure 3.
Fig. 3. Closeup of the C-terminal domain interacting residues. Some of these residues (678 to 681) are located on a conserved loop observed in other TLR structures.
The above figures are reprinted from an Open Access publication published by the AAAs: Science (2008, 320, 379-381) copyright 2008.
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