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PDBsum entry 3cf3

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3cf3 calculated with MOLE 2.0 PDB id
3cf3
Pores calculated on whole structure Pores calculated excluding ligands

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31 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.17 1.16 33.8 -1.74 -0.38 20.2 78 6 1 2 4 1 2 0  ADP 807 C
2 3.03 3.78 41.8 -1.67 -0.44 19.1 87 5 2 2 3 0 3 0  ADP 900 B
3 1.20 1.17 59.9 -1.61 -0.46 18.2 78 8 2 2 5 1 3 0  ADP 807 C
4 1.64 1.90 60.1 -0.96 -0.13 15.0 75 2 5 1 5 3 3 0  
5 2.50 2.50 62.1 -2.02 -0.52 22.2 86 6 3 3 5 0 0 0  
6 1.63 1.63 65.2 -2.01 -0.54 23.4 82 9 3 3 4 0 3 0  ADP 900 C
7 1.74 1.81 68.6 -1.13 -0.37 17.8 83 7 5 3 5 0 4 0  ADP 900 C
8 2.50 2.50 69.9 -1.39 -0.47 14.3 81 5 3 4 6 0 3 0  ADP 900 B
9 1.43 1.70 71.8 -0.83 -0.21 17.3 81 8 4 6 8 1 1 2  ADP 900 C
10 1.38 1.39 85.3 -1.71 -0.58 19.6 78 9 3 2 4 1 4 0  
11 1.38 1.39 86.7 -2.45 -0.57 30.7 80 12 5 2 3 1 2 0  
12 1.53 1.64 87.5 -0.87 -0.12 14.6 74 2 8 4 10 5 7 0  
13 1.65 1.75 88.6 -0.97 -0.39 11.2 81 8 3 6 9 1 4 1  ADP 807 C
14 1.64 1.65 90.0 -1.28 -0.03 21.4 77 3 8 2 6 4 3 0  
15 1.40 3.05 99.0 0.30 0.01 8.2 78 2 4 6 12 3 2 2  ADP 900 A
16 1.38 1.39 106.1 -1.00 -0.35 16.6 84 10 8 6 8 0 3 0  ADP 900 C
17 1.42 1.70 111.3 -0.64 -0.34 9.1 82 7 4 10 10 2 4 2  
18 1.23 1.24 110.6 -0.96 -0.29 17.1 82 6 6 8 11 1 0 2  ADP 900 A
19 1.63 1.63 113.6 -1.33 -0.52 12.2 81 10 4 8 6 1 6 0  ADP 900 C
20 2.47 2.86 115.6 -1.58 -0.44 19.6 82 9 11 7 7 1 5 0  ADP 900 B
21 2.51 2.91 115.8 -2.00 -0.52 25.0 84 12 12 7 7 1 2 0  
22 1.96 1.96 122.6 -2.44 -0.58 28.3 79 15 6 4 3 2 5 0  
23 2.48 2.51 129.3 -1.75 -0.48 25.0 82 8 12 5 9 1 2 0  
24 1.43 2.95 135.8 -1.57 -0.33 20.9 81 10 7 9 11 1 3 2  ADP 900 A
25 1.70 1.88 161.2 -1.09 -0.35 17.0 81 9 14 9 11 3 5 0  ADP 900 B
26 2.14 2.13 168.6 -1.63 -0.52 18.5 81 11 13 9 10 2 6 0  
27 1.68 1.68 182.8 -2.02 -0.53 27.1 82 18 20 4 9 1 4 0  
28 1.53 1.67 211.1 -1.06 -0.31 17.7 82 12 16 12 15 3 4 2  
29 1.72 1.64 216.8 -1.28 -0.39 17.9 83 13 18 13 13 2 7 0  ADP 900 C
30 1.28 1.26 244.9 -1.84 -0.47 24.2 83 18 20 11 14 2 4 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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