PDBsum entry 3cdp Go to PDB code:  Tunnel analysis for: 3cdp calculated with MOLE 2.0 PDB id 3cdp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 2.28 32.0 0.84 0.32 8.9 75 4 1 1 4 3 0 1   2 1.20 2.42 35.4 0.81 0.20 10.0 72 2 3 0 8 1 1 1   3 1.21 2.23 47.9 1.30 0.48 5.7 78 4 1 3 11 2 0 1  YRG 1 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.