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PDBsum entry 3ccs
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Tunnel analysis for: 3ccs calculated with  MOLE 2.0
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PDB id
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3ccs
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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21 tunnels,
coloured by tunnel radius |
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26 tunnels,
coloured by
tunnel radius
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26 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.18 |
1.21 |
134.2 |
-0.61 |
-0.78 |
4.9 |
77 |
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2 |
0 |
1 |
0 |
0 |
1 |
0 |
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G 836 0 U 837 0 C 838 0 C 839 0 C 842 0 C 847 0 C
848 0 C 849 0 U 850 0 C 851 0 G 1373 0 A 1375 0 G
1376 0 C 1377 0 G 1378 0 A 1693 0 A 1732 0 A 1733
0 C 1734 0 A 1737 0 C 1738 0 G 1739 0 C 1753 0 G
1756 0 U 1757 0 U 1758 0 A 1759 0 C 1769 0 U 1770
0 U 1817 0 C 1818 0 G 1820 0 A 1821 0 A 1822 0 G
1823 0 C 1824 0 U 1825 0 U 2016 0 U 2017 0 A 2018
0 A 2019 0 C 2020 0 C 2021 0 A 2022 0 G 2023 0 G
2045 0 G 2046 0 A 2089 0 G 2090 0 G 2091 0 G 2092
0 G 2093 0 G 2613 0 U 2648 0 MG 8064 0 SR 9007 0
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2 |
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1.18 |
1.21 |
143.2 |
-0.59 |
-0.79 |
4.7 |
82 |
2 |
0 |
2 |
0 |
0 |
1 |
0 |
G 13 0 C 14 0 C 15 0 A 16 0 G 17 0 C 18 0 U 19 0
G 20 0 A 519 0 A 520 0 U 522 0 C 523 0 U 548 0 A
549 0 C 550 0 A 551 0 A 552 0 G 553 0 A 603 0 G
604 0 C 605 0 A 1321 0 G 1322 0 G 1323 0 G 1337 0
C 1366 0 A 1367 0 U 1368 0 A 1369 0 U 1371 0 A
1372 0 G 1373 0 A 1732 0 A 1733 0 C 1734 0 G 2046
0 C 2047 0 C 2061 0 A 2062 0 C 2087 0 C 2088 0 A
2089 0 G 2090 0 G 2091 0 G 2092 0 G 2093 0 G 2613
0 U 2648 0 A 2649 0 U 2650 0 C 2651 0 MG 8048 0
SR 8973 0
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3 |
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1.18 |
1.20 |
144.8 |
-0.85 |
-0.67 |
7.3 |
66 |
2 |
0 |
1 |
0 |
1 |
1 |
0 |
C 838 0 A 1732 0 A 1733 0 C 1734 0 C 1735 0 G
1944 0 G 1945 0 U 1967 0 G 2045 0 G 2046 0 A 2089
0 G 2090 0 G 2091 0 G 2092 0 G 2093 0 A 2099 0 A
2100 0 A 2103 0 A 2474 0 A 2538 0 G 2540 0 G 2611
0 A 2612 0 G 2613 0 C 2614 0 G 2616 0 G 2618 0
UR3 2619 0 U 2620 0 PSU 2621 0 A 2622 0 A 2624 0
C 2625 0 C 2626 0 G 2627 0 U 2628 0 C 2629 0 G
2630 0 U 2631 0 A 2635 0 C 2636 0 U 2640 0 G 2642
0 G 2643 0 C 2644 0 U 2645 0 G 2646 0 C 2647 0 U
2648 0 MG 8067 0 MG 8078 0 SR 8990 0 NA 8552 B
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4 |
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1.18 |
1.21 |
148.5 |
-0.67 |
-0.77 |
5.8 |
76 |
3 |
0 |
1 |
0 |
0 |
1 |
0 |
U 794 0 G 795 0 C 813 0 G 814 0 G 836 0 U 837 0 C
838 0 C 839 0 C 842 0 C 847 0 C 848 0 C 849 0 G
1373 0 A 1375 0 G 1376 0 C 1377 0 G 1378 0 A 1693
0 A 1732 0 A 1733 0 C 1734 0 A 1737 0 C 1738 0 G
1739 0 U 1740 0 G 1756 0 U 1757 0 U 1758 0 A 1759
0 C 1762 0 C 1763 0 C 1764 0 G 1765 0 U 1766 0 G
1777 0 A 1778 0 A 1779 0 G 1780 0 G 1781 0 G 1782
0 A 1783 0 U 1784 0 A 1811 0 G 1812 0 A 1815 0 C
1816 0 G 1819 0 G 2045 0 G 2046 0 A 2089 0 G 2090
0 G 2091 0 G 2092 0 G 2093 0 G 2613 0 U 2648 0 C
2752 0 SR 8965 0 SR 8971 0 SR 9007 0
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5 |
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1.18 |
1.21 |
149.1 |
-0.65 |
-0.78 |
4.7 |
86 |
2 |
0 |
3 |
0 |
0 |
1 |
0 |
G 836 0 U 837 0 C 838 0 C 839 0 C 842 0 C 847 0 C
848 0 C 849 0 G 1373 0 A 1375 0 G 1376 0 C 1377 0
G 1378 0 A 1693 0 A 1732 0 A 1733 0 C 1734 0 A
1737 0 C 1738 0 G 1739 0 U 1740 0 G 1756 0 C 1808
0 G 1809 0 C 1816 0 G 2045 0 G 2046 0 A 2089 0 G
2090 0 G 2091 0 G 2092 0 G 2093 0 G 2613 0 U 2648
0 C 2729 0 G 2730 0 G 2731 0 U 2732 0 A 2741 0 G
2742 0 A 2743 0 G 2744 0 U 2749 0 C 2751 0 C 2752
0 U 2866 0 G 2867 0 C 2868 0 G 2884 0 A 2885 0 C
2886 0 SR 9007 0
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6 |
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1.18 |
1.21 |
153.6 |
-1.29 |
-0.61 |
12.8 |
78 |
9 |
1 |
5 |
3 |
1 |
1 |
0 |
A 466 0 G 467 0 A 476 0 U 488 0 A 489 0 A 497 0 A
498 0 G 499 0 G 514 0 C 838 0 U 845 0 A 1427 0 C
1428 0 A 1732 0 A 1733 0 C 1734 0 C 1735 0 G 2045
0 G 2046 0 A 2089 0 G 2090 0 G 2091 0 G 2092 0 G
2093 0 A 2099 0 A 2100 0 G 2540 0 G 2611 0 A 2612
0 G 2613 0 C 2614 0 C 2644 0 U 2645 0 G 2646 0 C
2647 0 U 2648 0 MG 8067 0 MG 8078 0 NA 8552 B
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7 |
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1.18 |
1.21 |
160.1 |
-0.58 |
-0.79 |
4.6 |
84 |
2 |
0 |
3 |
0 |
0 |
1 |
0 |
G 13 0 C 14 0 C 530 0 G 531 0 A 536 0 C 538 0 G
539 0 A 540 0 C 541 0 A 542 0 G 543 0 C 556 0 C
557 0 C 558 0 U 559 0 G 561 0 A 562 0 C 563 0 G
564 0 A 590 0 A 591 0 G 592 0 A 593 0 C 594 0 G
607 0 A 608 0 U 609 0 U 611 0 U 612 0 C 613 0 U
614 0 G 1093 0 A 1367 0 U 1368 0 A 1369 0 U 1371
0 A 1372 0 G 1373 0 A 1732 0 A 1733 0 C 1734 0 G
2046 0 C 2047 0 A 2062 0 U 2063 0 C 2086 0 C 2087
0 C 2088 0 A 2089 0 G 2090 0 G 2091 0 G 2092 0 G
2093 0 G 2613 0 U 2648 0 A 2649 0 U 2650 0 C 2651
0 MG 8048 0
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8 |
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1.17 |
1.25 |
171.4 |
-0.59 |
-0.64 |
7.8 |
80 |
4 |
5 |
3 |
2 |
2 |
2 |
0 |
G 1235 0 U 1371 0 A 1372 0 G 1373 0 A 1732 0 A
1733 0 C 1734 0 G 2046 0 C 2047 0 A 2083 0 C 2084
0 C 2086 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G
2091 0 G 2092 0 G 2093 0 U 2550 0 C 2560 0 G 2613
0 U 2648 0 A 2649 0 U 2650 0 C 2651 0 U 2652 0 A
2653 0 C 2654 0 U 2655 0 G 2657 0 A 2677 0 A 2678
0 G 2679 0 A 2680 0 A 2681 0 C 2695 0 G 2696 0 A
2703 0 C 2704 0 U 2705 0 C 2769 0 G 2770 0 G 2771
0 G 2798 0 A 2799 0 A 2800 0 A 2801 0 C 2802 0 C
2803 0 C 2804 0 A 2805 0 G 2809 0 A 2813 0 MG
8048 0
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9 |
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1.18 |
1.25 |
174.7 |
-0.61 |
-0.77 |
5.5 |
84 |
2 |
2 |
2 |
1 |
0 |
2 |
0 |
G 1235 0 U 1371 0 A 1372 0 G 1373 0 A 1732 0 A
1733 0 C 1734 0 G 2046 0 C 2047 0 A 2083 0 C 2084
0 C 2086 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G
2091 0 G 2092 0 G 2093 0 U 2550 0 U 2557 0 G 2558
0 C 2560 0 C 2561 0 G 2562 0 U 2563 0 C 2565 0 A
2569 0 G 2570 0 C 2571 0 G 2613 0 U 2648 0 A 2649
0 U 2650 0 C 2651 0 U 2652 0 A 2653 0 C 2654 0 U
2655 0 G 2657 0 A 2677 0 A 2678 0 G 2679 0 A 2680
0 A 2681 0 G 2683 0 A 2684 0 C 2685 0 C 2686 0 A
2703 0 C 2704 0 U 2705 0 C 2707 0 C 2769 0 G 2779
0 A 2800 0 A 2801 0 C 2802 0 C 2803 0 C 2804 0 A
2805 0 G 2809 0 A 2813 0 MG 8048 0
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10 |
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1.18 |
1.22 |
173.2 |
-0.94 |
-0.76 |
9.3 |
81 |
6 |
1 |
1 |
0 |
0 |
1 |
0 |
U 1371 0 A 1372 0 G 1373 0 A 1729 0 G 1730 0 A
1732 0 A 1733 0 C 1734 0 G 2046 0 C 2047 0 C 2084
0 C 2086 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G
2091 0 G 2092 0 G 2093 0 G 2613 0 U 2648 0 A 2649
0 U 2650 0 C 2651 0 U 2652 0 A 2653 0 C 2654 0 U
2655 0 G 2657 0 G 2658 0 U 2659 0 U 2669 0 G 2670
0 A 2812 0 G 2829 0 U 2830 0 C 2831 0 C 2832 0 C
2833 0 G 2834 0 C 2835 0 G 2836 0 G 2842 0 A 2843
0 C 2844 0 G 2845 0 C 2846 0 A 2854 0 G 2855 0 A
2856 0 C 2857 0 U 2858 0 C 2859 0 C 2894 0 C 2895
0 A 2896 0 C 2897 0 G 2898 0 MG 8048 0
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11 |
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1.18 |
1.25 |
188.2 |
-0.60 |
-0.73 |
4.9 |
62 |
1 |
0 |
1 |
0 |
1 |
1 |
0 |
G 787 0 A 788 0 C 789 0 A 827 0 G 828 0 G 830 0 U
831 0 U 835 0 G 836 0 U 837 0 C 838 0 C 839 0 U
845 0 A 846 0 C 847 0 C 848 0 U 850 0 A 1406 0 A
1407 0 G 1490 0 G 1491 0 A 1493 0 C 1514 0 A 1515
0 U 1516 0 C 1517 0 U 1531 0 G 1532 0 G 1535 0 C
1536 0 C 1537 0 C 1575 0 A 1616 0 C 1617 0 A 1642
0 C 1643 0 C 1644 0 A 1661 0 C 1662 0 G 1663 0 A
1664 0 G 1665 0 C 1666 0 G 1695 0 U 1696 0 G 1697
0 U 1698 0 C 1699 0 C 1700 0 A 1701 0 A 1732 0 A
1733 0 C 1734 0 C 1735 0 G 1837 0 U 1838 0 G 2045
0 G 2046 0 A 2089 0 G 2090 0 G 2091 0 G 2092 0 G
2093 0 G 2613 0 U 2645 0 G 2646 0 C 2647 0 U 2648
0 NA 8569 0 SR 8902 0 SR 8937 0 SR 8941 0 NA 8552
B
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12 |
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1.19 |
1.22 |
191.2 |
-0.71 |
-0.79 |
6.5 |
93 |
4 |
2 |
5 |
1 |
0 |
1 |
0 |
G 13 0 C 14 0 C 15 0 A 16 0 G 17 0 U 522 0 G 709
0 C 934 0 G 935 0 U 1029 0 U 1030 0 C 1272 0 C
1273 0 A 1274 0 C 1275 0 U 1276 0 U 1279 0 U 1298
0 G 1299 0 G 1300 0 C 1301 0 G 1302 0 C 1303 0 G
1319 0 C 1320 0 A 1321 0 G 1322 0 G 1331 0 C 1332
0 U 1333 0 A 1345 0 U 1346 0 U 1347 0 A 1348 0 G
1349 0 U 1350 0 C 1366 0 A 1367 0 U 1368 0 A 1369
0 U 1371 0 A 1372 0 G 1373 0 A 1732 0 A 1733 0 C
1734 0 G 2046 0 C 2047 0 C 2061 0 A 2062 0 C 2087
0 C 2088 0 A 2089 0 G 2090 0 G 2091 0 G 2092 0 G
2093 0 G 2613 0 U 2648 0 A 2649 0 U 2650 0 C 2651
0 MG 8048 0 MG 8086 Y
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13 |
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1.19 |
1.30 |
202.8 |
-0.83 |
-0.73 |
7.9 |
77 |
6 |
2 |
2 |
0 |
1 |
1 |
0 |
A 767 0 U 768 0 C 769 0 C 770 0 G 771 0 G 772 0 A
773 0 C 838 0 U 845 0 U 866 0 A 867 0 G 868 0 G
869 0 U 883 0 C 884 0 G 887 0 U 888 0 C 889 0 G
1460 0 U 1461 0 C 1474 0 G 1475 0 A 1476 0 C 1477
0 U 1478 0 A 1732 0 A 1733 0 C 1734 0 C 1735 0 G
1837 0 A 1857 0 A 1858 0 A 1859 0 C 1861 0 C 1862
0 G 1863 0 G 1867 0 G 1868 0 A 1869 0 C 1870 0 U
1871 0 C 1872 0 G 2045 0 G 2046 0 A 2089 0 G 2090
0 G 2091 0 G 2092 0 G 2093 0 A 2099 0 A 2100 0 G
2125 0 C 2247 0 C 2248 0 A 2260 0 C 2261 0 C 2262
0 C 2477 0 U 2478 0 G 2540 0 G 2611 0 A 2612 0 G
2613 0 C 2614 0 C 2644 0 U 2645 0 G 2646 0 C 2647
0 U 2648 0 MG 8067 0 MG 8078 0 NA 8552 B
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14 |
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1.24 |
1.26 |
232.0 |
-0.57 |
-0.65 |
8.7 |
84 |
5 |
7 |
3 |
7 |
1 |
2 |
0 |
U 1120 0 G 1121 0 G 1131 0 A 1132 0 A 1133 0 G
1135 0 U 1136 0 A 1144 0 G 1145 0 C 1146 0 U 1220
0 G 1221 0 A 1222 0 G 1223 0 G 1224 0 C 1225 0 G
1226 0 C 1227 0 A 1230 0 A 1231 0 A 1232 0 G 1235
0 A 1236 0 C 1238 0 U 1371 0 A 1372 0 G 1373 0 A
1732 0 A 1733 0 C 1734 0 G 2046 0 C 2047 0 A 2083
0 C 2084 0 C 2086 0 C 2087 0 C 2088 0 A 2089 0 G
2090 0 G 2091 0 G 2092 0 G 2093 0 U 2550 0 C 2551
0 C 2552 0 A 2577 0 G 2578 0 G 2613 0 U 2648 0 A
2649 0 U 2650 0 C 2651 0 U 2652 0 A 2653 0 C 2654
0 U 2655 0 G 2657 0 A 2677 0 A 2678 0 G 2679 0 G
2809 0 A 2813 0 MG 8018 0 MG 8048 0 C 91 9
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15 |
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1.22 |
1.34 |
18.3 |
-1.45 |
-0.63 |
18.9 |
79 |
2 |
1 |
0 |
1 |
0 |
1 |
0 |
C 136 0 U 137 0 C 139 0 A 261 0
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16 |
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1.22 |
1.34 |
20.3 |
-1.36 |
-0.64 |
17.6 |
80 |
2 |
2 |
0 |
1 |
0 |
1 |
0 |
C 136 0 U 137 0 C 260 0 A 261 0 SR 9005 F
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17 |
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1.57 |
1.69 |
19.6 |
-1.38 |
-0.51 |
12.5 |
72 |
0 |
2 |
1 |
0 |
1 |
3 |
0 |
C 2769 0 G 2770 0
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18 |
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1.55 |
1.66 |
22.3 |
-1.68 |
-0.65 |
15.7 |
67 |
0 |
2 |
1 |
0 |
1 |
3 |
0 |
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19 |
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1.62 |
1.94 |
19.5 |
-1.68 |
-0.55 |
19.4 |
89 |
3 |
0 |
1 |
0 |
0 |
1 |
0 |
G 964 0 A 965 0 U 966 0 U 967 0 G 968 0 C 1004 0
A 1005 0
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20 |
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1.56 |
1.57 |
21.3 |
-1.87 |
-0.56 |
21.6 |
88 |
3 |
1 |
1 |
0 |
0 |
1 |
0 |
G 964 0 A 965 0 U 966 0 U 967 0 G 968 0 C 1004 0
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21 |
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1.71 |
1.74 |
16.3 |
-2.56 |
-0.61 |
28.8 |
88 |
3 |
0 |
1 |
0 |
0 |
0 |
0 |
C 2502 0 A 2503 0 A 2504 0 G 2505 0
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22 |
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1.29 |
1.55 |
19.6 |
-2.68 |
-0.60 |
30.2 |
88 |
3 |
0 |
1 |
0 |
0 |
0 |
0 |
C 2502 0 A 2503 0 A 2504 0 A 2511 0 U 2512 0
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23 |
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1.14 |
1.35 |
23.5 |
-0.44 |
-0.03 |
10.9 |
88 |
1 |
1 |
2 |
5 |
2 |
0 |
0 |
U 263 0 G 264 0
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24 |
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1.12 |
1.32 |
24.8 |
-0.50 |
-0.05 |
14.9 |
88 |
1 |
3 |
2 |
5 |
2 |
0 |
0 |
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25 |
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1.15 |
1.34 |
25.5 |
-0.55 |
-0.10 |
13.9 |
88 |
1 |
3 |
2 |
5 |
2 |
0 |
0 |
U 263 0 G 264 0
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26 |
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1.29 |
2.48 |
15.1 |
2.33 |
0.46 |
1.4 |
92 |
0 |
0 |
2 |
7 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program