PDBsum entry 3ccl Go to PDB code:  Tunnel analysis for: 3ccl calculated with MOLE 2.0 PDB id 3ccl Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.29 317.8 -1.24 -0.73 12.4 81 11 9 6 4 1 2 0  C 31 0 G 32 0 G 33 0 U 35 0 G 50 0 C 62 0 U 63 0 C 85 0 A 86 0 A 151 0 A 174 0 A 177 0 C 208 0 G 213 0 U 214 0 G 223 0 U 224 0 G 225 0 C 440 0 A 441 0 A 442 0 C 443 0 G 458 0 A 459 0 C 461 0 A 462 0 A 463 0 G 464 0 A 466 0 G 467 0 A 476 0 G 479 0 C 480 0 G 514 0 U 647 0 G 648 0 U 649 0 C 650 0 U 651 0 G 652 0 A 686 0 G 690 0 G 739 0 G 740 0 C 741 0 G 742 0 C 757 0 A 758 0 C 759 0 U 840 0 G 1037 0 A 1427 0 A 1732 0 A 1733 0 C 1734 0 G 2046 0 C 2047 0 C 2056 0 A 2089 0 G 2090 0 G 2091 0 G 2092 0 G 2093 0 C 2098 0 A 2099 0 A 2100 0 C 2318 0 C 2319 0 U 2384 0 G 2385 0 U 2386 0 U 2387 0 G 2397 0 A 2398 0 G 2399 0 G 2400 0 A 2401 0 U 2419 0 G 2420 0 G 2421 0 C 2427 0 G 2613 0 G 2646 0 C 2647 0 U 2648 0 A 2649 0 SR 8946 0 2 1.71 1.91 15.1 -2.20 -0.64 25.1 85 4 0 1 0 0 0 0  C 2502 0 A 2503 0 A 2504 0 G 2505 0 A 2517 0 3 1.45 1.61 16.4 -2.09 -0.66 23.5 85 4 0 1 0 0 0 0  C 2502 0 A 2503 0 A 2504 0 G 2505 0 4 1.52 1.62 20.8 -2.04 -0.52 23.9 88 3 1 1 0 0 1 0  G 964 0 A 965 0 U 966 0 C 1004 0 5 1.38 1.42 16.0 -2.04 -0.71 19.2 84 1 1 1 1 0 0 0   6 1.39 1.41 17.0 0.21 0.44 16.7 80 2 0 1 1 0 1 0  U 1149 0 A 1150 0 7 1.15 3.84 17.1 1.75 0.48 5.9 76 0 2 0 3 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.