PDBsum entry 3c5z

Tunnel analysis for: 3c5z calculated with

MOLE 2.0

PDB id

3c5z

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.25

1.38

22.5

-1.09

-0.31

18.6

88

5

1

4

4

1

0

0

2

1.41

1.41

20.4

-0.66

-0.50

6.0

94

1

2

6

3

0

1

0

3

1.24

1.49

22.3

-2.04

-0.64

19.6

92

3

2

5

2

0

1

0

4

1.16

1.66

19.1

0.18

0.14

7.5

72

1

1

1

4

3

1

0

5

1.18

1.67

19.3

0.24

0.22

8.1

68

1

1

1

4

6

1

0

6

1.16

1.31

15.6

-1.01

0.03

11.2

70

1

1

1

1

3

2

0

7

1.18

1.68

23.6

0.22

0.22

9.3

69

2

1

1

4

6

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.