PDBsum entry 3c51

Pore analysis for: 3c51 calculated with

MOLE 2.0

PDB id

3c51

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.23

1.28

82.9

-2.36

-0.40

24.7

75

8

1

1

1

3

1

0

2

3.72

5.79

30.2

-2.36

-0.36

36.8

81

7

5

1

2

0

0

0

3

3.72

5.80

35.3

-2.61

-0.52

32.7

84

8

5

3

2

0

0

0

4

2.45

2.90

42.9

-2.12

-0.48

22.4

80

6

3

2

0

2

0

0

ADP 562 A

5

1.54

1.54

49.9

-1.58

-0.62

17.6

84

3

2

2

1

2

0

0

6

2.06

2.17

57.7

-2.35

-0.36

25.2

80

6

4

2

0

2

0

0

ADP 562 A

7

1.23

1.23

63.4

-1.75

-0.64

16.8

90

5

1

4

0

1

0

0

8

1.22

1.22

71.5

-2.44

-0.61

25.9

84

7

3

2

0

1

0

0

ADP 562 A

9

1.22

1.22

76.7

-2.20

-0.61

26.2

82

6

3

2

1

1

1

0

ADP 562 A

10

1.22

1.26

83.2

-1.89

-0.53

18.0

89

5

2

4

0

1

0

0

11

1.40

3.79

43.9

-2.25

-0.30

25.6

68

5

3

2

2

2

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.