PDBsum entry 3c09 Go to PDB code:  Tunnel analysis for: 3c09 calculated with MOLE 2.0 PDB id 3c09 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.59 15.7 -0.37 -0.50 2.1 98 0 0 5 1 1 0 0   2 1.42 1.59 18.0 -0.24 -0.50 2.2 99 0 0 6 1 1 0 0   3 1.49 1.53 24.1 1.02 -0.08 1.7 81 0 0 2 5 3 0 0   4 1.49 1.53 28.2 0.42 -0.23 6.7 86 1 2 4 3 2 0 1   5 1.13 3.63 33.1 2.39 1.01 3.0 68 2 0 0 14 2 0 0   6 1.12 1.12 17.3 -0.38 -0.44 8.2 83 1 2 3 4 0 1 0   7 1.13 1.13 17.8 -0.22 -0.43 8.8 83 2 1 3 5 0 0 0   8 1.12 1.12 21.2 0.05 -0.34 3.2 80 1 0 3 4 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.