PDBsum entry 3byi Go to PDB code:  Pore analysis for: 3byi calculated with MOLE 2.0 PDB id 3byi Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.48 1.57 26.5 -0.62 -0.36 10.9 93 2 2 5 4 0 0 0   2 1.62 1.64 28.0 0.12 -0.30 5.3 94 1 2 6 5 0 0 0   3 1.71 1.78 28.8 -0.06 -0.26 5.9 94 0 2 6 4 0 0 0   4 1.36 1.36 34.3 -0.47 -0.40 9.8 94 1 2 6 6 0 0 0   5 1.86 3.64 42.6 -1.80 -0.18 20.3 78 3 4 2 1 1 0 0   6 2.09 2.19 52.3 0.17 -0.24 5.3 98 0 2 10 14 0 0 0   7 1.53 1.60 57.1 0.10 -0.16 6.1 95 2 3 12 15 0 0 0   8 1.87 2.03 57.8 0.38 0.09 7.7 94 4 1 8 12 0 1 0   9 1.50 1.58 60.7 0.12 0.12 11.2 91 6 2 8 13 0 1 0   10 1.53 1.60 64.0 0.51 0.24 8.4 92 7 2 8 15 0 1 0   11 1.78 1.95 65.6 -1.08 -0.27 13.6 91 5 2 10 8 1 2 0   12 1.80 1.97 75.5 -0.23 0.16 13.2 91 8 1 7 9 1 2 0   13 1.78 1.94 77.4 -0.35 0.15 14.8 89 7 1 7 9 1 3 0   14 1.20 2.57 159.1 -1.74 -0.56 18.2 88 8 8 14 9 2 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.