spacer
spacer

PDBsum entry 3bwk

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3bwk calculated with MOLE 2.0 PDB id
3bwk
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
14 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.27 2.87 27.9 -1.20 -0.22 19.9 69 1 3 1 1 5 0 0  
2 2.73 2.72 43.7 -0.84 -0.41 17.9 78 0 7 2 8 2 0 0  C1P 300 A C1P 300 C
3 2.18 2.40 44.6 -1.50 -0.62 24.1 73 1 8 1 5 2 1 0  
4 2.14 2.75 44.7 -1.60 -0.64 24.8 73 1 8 1 5 2 1 0  
5 2.18 2.40 46.9 -1.71 -0.66 27.2 75 1 9 1 6 2 1 0  
6 2.15 2.65 47.2 -1.67 -0.65 26.0 75 1 9 1 6 2 1 0  
7 1.95 4.74 48.0 -0.48 -0.24 17.9 80 3 7 3 7 2 0 0  C1P 300 A C1P 300 C
8 1.95 4.48 50.5 -0.46 -0.18 16.2 80 3 7 3 7 2 0 0  C1P 300 B C1P 300 D
9 1.33 1.35 50.9 -1.62 -0.58 21.7 81 1 8 2 5 1 2 0  SO4 302 B
10 1.64 1.66 52.1 -1.57 -0.40 17.2 80 3 5 4 0 4 1 0  
11 1.33 1.35 53.5 -1.76 -0.61 24.7 82 1 9 2 6 1 2 0  SO4 302 B
12 1.95 4.52 57.5 -1.40 -0.48 27.8 79 4 11 2 6 2 1 0  
13 1.95 4.57 57.9 -1.44 -0.49 27.8 79 4 11 2 6 2 1 0  
14 1.33 1.35 64.1 -1.61 -0.51 26.6 84 4 11 3 6 1 2 0  SO4 302 B
15 1.64 1.66 77.4 -0.93 -0.35 15.2 74 2 8 6 5 7 1 0  C1P 300 B C1P 300 D
16 1.64 1.66 83.5 -1.64 -0.58 22.4 73 3 11 5 3 7 2 0  
17 1.65 1.66 83.6 -1.69 -0.60 22.6 73 3 11 5 3 7 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer