spacer
spacer

PDBsum entry 3bfx

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3bfx calculated with MOLE 2.0 PDB id
3bfx
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
15 tunnels, coloured by tunnel radius 15 tunnels, coloured by tunnel radius 15 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.34 20.4 -1.44 -0.40 19.1 80 5 0 1 0 3 0 0  4000 A3P A
2 1.35 23.6 -1.22 -0.06 14.2 75 3 1 2 1 3 1 0  4000 A3P A
3 1.61 20.8 -1.93 -0.53 24.9 81 2 2 1 2 2 0 0  4001 A3P A
4 1.62 20.8 -2.02 -0.59 24.5 82 3 2 1 1 2 0 0  4001 A3P A
5 1.54 25.8 -1.38 -0.10 17.7 76 3 2 2 1 3 1 0  4001 A3P A
6 1.62 27.1 -1.49 -0.29 22.5 81 5 2 2 1 4 0 0  4001 A3P A
7 1.63 36.2 -1.26 -0.14 18.2 76 5 2 2 2 6 0 0  4001 A3P A
8 1.59 11.7 -1.00 0.28 12.1 74 2 1 2 1 3 0 0  
9 2.25 3.9 -0.30 0.51 14.1 75 1 1 0 2 2 0 0  
10 1.66 6.6 -0.41 0.39 6.5 68 1 1 1 1 3 0 0  
11 1.50 7.2 -0.76 -0.29 2.3 75 0 0 1 2 1 1 0  
12 1.65 9.3 0.09 0.44 7.8 80 1 1 0 2 1 1 0  
13 1.65 10.1 -0.22 0.35 9.8 81 1 2 0 2 1 0 0  
14 2.01 5.6 -1.42 -0.71 8.2 90 0 1 3 1 0 1 0  
15 1.31 8.5 -0.34 -0.19 18.8 85 1 1 1 3 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer