PDBsum entry 3bep Go to PDB code:  Pore analysis for: 3bep calculated with MOLE 2.0 PDB id 3bep Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.74 2.73 40.2 -1.46 -0.39 16.2 84 5 1 3 3 2 0 0  DG 8 C DT 9 C DA 10 C DG 19 D DA 20 D DT 21 D DG 22 D 2 2.72 2.73 45.3 -1.68 -0.47 14.8 84 6 3 4 4 2 0 0  DG 8 C DT 9 C DA 10 C DG 22 D 3 2.93 2.92 54.5 -1.74 -0.48 21.6 87 5 0 1 2 0 0 0  DC 2 C DC 3 C DC 4 C DA 5 C DT 6 C DC 7 C DT 9 C DT 12 D DT 13 D DT 14 D DT 16 D DA 17 D DC 18 D DG 19 D DT 21 D 4 1.74 1.73 59.2 -0.69 -0.05 14.7 81 4 2 5 3 3 0 0  DC 3 C DC 4 C DT 11 C DC 18 D DG 19 D 5 1.76 1.76 68.1 -0.77 -0.15 14.8 85 5 1 3 4 2 0 0  DC 2 C DC 3 C DC 4 C DC 18 D DG 19 D DT 21 D 6 1.73 1.74 75.2 -1.15 -0.15 18.2 84 7 2 5 4 2 0 0  DC 3 C DC 4 C DA 5 C DT 6 C DC 7 C DT 9 C DT 12 D DT 13 D DT 14 D DT 16 D DA 17 D DC 18 D 7 1.81 1.84 104.5 -1.02 -0.25 13.5 83 9 1 6 5 4 0 0  DC 3 C DC 4 C DA 5 C DT 6 C DG 22 D DG 23 D DG 24 D 8 2.72 2.87 108.7 -1.33 -0.52 15.1 85 9 3 4 3 3 0 0  DC 2 C DC 3 C DC 4 C DA 5 C DT 6 C 5CY 111 C DC 18 D DG 19 D DT 21 D DG 22 D DG 23 D DG 24 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.