PDBsum entry 3b5t Go to PDB code:  Pore analysis for: 3b5t calculated with MOLE 2.0 PDB id 3b5t Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.53 1.76 27.5 -1.17 -0.35 13.9 89 3 1 5 2 3 0 0   2 1.17 1.40 39.1 -3.29 -0.58 38.3 77 6 3 1 0 1 0 0   3 1.96 1.98 128.6 -2.80 -0.62 28.8 82 15 11 8 0 3 0 0  MSE 1 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.