PDBsum entry 3b2u Go to PDB code:  Pore analysis for: 3b2u calculated with MOLE 2.0 PDB id 3b2u Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.03 3.79 38.4 -1.73 -0.76 16.6 90 4 3 5 0 0 2 0  NAG 1 i NAG 2 i 2 1.28 2.62 40.8 -0.80 -0.46 12.1 90 4 1 6 4 0 0 0   3 1.27 2.62 44.9 -1.40 -0.64 14.3 92 4 3 6 2 0 0 0   4 3.58 3.82 50.6 -1.31 -0.52 14.8 76 3 4 4 5 0 4 0   5 1.91 1.94 68.0 -1.30 -0.62 15.3 86 5 4 8 6 0 2 0   6 2.87 2.86 76.1 -1.26 -0.56 13.7 92 7 3 11 4 1 1 0  NAG 1 l NAG 2 l 7 1.40 1.46 78.5 -1.32 -0.65 15.7 82 4 5 4 4 0 4 0   8 1.60 3.78 79.9 -0.87 -0.47 12.7 82 4 4 4 5 2 5 0   9 1.54 1.59 84.0 -0.94 -0.52 10.5 91 4 4 12 5 0 3 0   10 1.64 1.72 88.0 -1.31 -0.51 10.4 89 4 5 10 3 2 1 0   11 1.55 1.59 91.6 -1.43 -0.63 10.9 90 5 4 14 1 2 4 0  NAG 1 l NAG 2 l NAG 1 n NAG 2 n 12 1.28 2.64 107.7 -1.40 -0.67 15.9 89 6 5 5 4 0 4 0   13 1.40 1.46 122.7 -1.18 -0.67 13.6 91 5 7 15 8 0 1 0   14 2.94 4.14 126.3 -1.33 -0.56 15.1 91 10 5 15 9 0 1 0  SO4 214 U NAG 1 j NAG 2 j BMA 3 j 15 2.39 2.73 129.7 -0.97 -0.58 11.7 85 6 8 13 8 1 4 0   16 2.04 2.21 130.2 -1.10 -0.58 11.8 84 5 7 10 8 0 5 0   17 2.59 2.72 130.8 -1.05 -0.67 12.1 91 7 8 18 8 1 0 0   18 1.26 1.44 134.3 -1.48 -0.53 14.9 88 6 8 17 5 5 2 0  NAG 3891 B 19 3.02 3.88 142.1 -1.09 -0.60 11.4 86 8 7 13 7 2 5 0  SO4 214 K NAG 2 b NAG 1 d 20 2.26 3.74 157.6 -1.17 -0.66 11.0 86 6 7 15 8 0 5 0   21 2.29 3.88 167.1 -1.04 -0.63 11.0 85 6 8 14 9 0 7 0   22 1.81 3.08 191.9 -1.16 -0.59 14.0 89 11 9 17 11 4 2 0  SO4 214 K NAG 2 b NAG 1 d 23 2.15 3.86 225.6 -1.11 -0.61 11.6 89 12 9 22 13 2 4 0  SO4 214 K NAG 2 b NAG 1 d 24 2.28 3.92 227.3 -1.26 -0.61 11.7 88 12 9 23 12 2 5 0  SO4 214 K NAG 2 b NAG 1 d 25 1.95 1.90 231.0 -1.10 -0.52 14.2 82 14 11 13 10 1 9 0   26 2.39 3.89 231.7 -1.15 -0.63 12.8 91 10 12 26 11 2 5 0  NAG 1 l NAG 2 l 27 1.71 1.74 228.8 -1.32 -0.65 13.1 89 6 11 18 9 1 6 0   28 2.43 2.57 254.0 -1.27 -0.62 12.3 90 12 9 29 12 1 5 0  NAG 3891 B SO4 214 K NAG 2 b 29 1.91 1.96 258.6 -1.13 -0.55 14.1 86 12 12 17 12 1 8 0   30 2.58 3.14 302.6 -1.26 -0.61 13.2 92 18 13 36 13 5 3 0  SO4 214 K NAG 2 b NAG 1 d NAG 1 l NAG 2 l NAG 2 n Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.