PDBsum entry 3b0r

Pore analysis for: 3b0r calculated with

MOLE 2.0

PDB id

3b0r

Pores calculated on whole structure

Pores calculated excluding ligands

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visualization
with HETATM:

without HETATM:

7 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.15

1.48

32.4

0.06

0.16

13.4

80

3

4

1

8

1

1

0

2

1.15

1.48

47.5

-0.87

-0.16

21.1

79

5

3

3

8

1

1

0

3

1.18

1.33

48.9

-2.26

-0.75

22.9

84

7

6

6

3

0

0

0

4

1.15

1.25

56.4

-0.44

-0.24

10.8

81

2

4

4

8

2

1

0

5

1.21

1.34

58.9

0.91

0.26

6.7

75

1

3

3

10

3

0

1

6

1.45

2.59

66.1

-0.35

-0.02

11.7

80

5

3

7

7

4

1

1

GW9 1 B

7

1.23

1.34

78.8

0.03

0.03

16.7

74

5

5

1

10

3

2

1

8

1.52

2.62

97.6

-0.43

-0.02

16.2

80

8

6

5

10

4

1

1

GW9 1 B

9

1.24

1.32

108.2

0.53

0.31

11.4

74

7

5

4

16

7

2

2

GW9 1 B

10

1.21

1.34

130.8

-0.35

-0.15

15.1

78

6

7

5

11

3

1

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.