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PDBsum entry 3azl

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 3azl calculated with MOLE 2.0 PDB id
3azl
Pores calculated on whole structure Pores calculated excluding ligands

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15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.65 2.80 29.1 -1.44 -0.57 16.0 84 5 0 3 1 0 1 0  DA 102 I DG 103 I DA 110 I DA 111 I DT 180 J DA
187 J DA 188 J DC 195 J
2 3.03 3.05 30.8 -0.49 -0.46 7.0 79 2 0 2 1 0 0 0  DG 18 I DT 90 I DT 91 I DT 92 I DT 93 I DC 195 J
DT 198 J DC 199 J DA 200 J
3 3.02 3.02 32.2 -1.92 -0.64 17.7 77 3 0 1 0 0 1 0  DT 130 I DC 132 I DA 141 I DT 142 I MN 1003 I DC
156 J DA 157 J DC 158 J DC 159 J DT 160 J
4 3.86 3.86 34.0 -1.45 -0.78 13.2 89 4 1 4 0 0 0 0  DT 130 I DC 132 I DA 133 I MN 1003 I DC 156 J DA
157 J DC 158 J DC 159 J DT 160 J DA 165 J DT 239
J DG 240 J
5 3.10 3.15 35.2 -1.65 -0.12 30.5 82 4 0 2 2 0 0 0  DC 69 I DT 70 I DG 71 I DA 72 I DA 73 I DT 74 I D
A 218 J DA 219 J DT 220 J
6 3.03 3.03 37.3 -2.10 -0.61 21.4 80 3 0 1 0 0 1 0  DC 132 I DA 133 I DG 134 I DA 141 I DT 142 I MN
1003 I DC 155 J DC 156 J DA 157 J
7 3.19 3.40 39.0 -2.20 -0.44 25.7 78 5 0 0 1 1 0 0  DT 37 I DT 38 I DA 111 I DT 112 I DC 114 I DA 115
I DC 116 I DA 173 J DA 174 J DA 175 J DT 178 J DT
180 J DT 250 J DT 251 J DT 252 J
8 2.03 2.03 40.7 -2.58 -0.57 29.7 71 3 2 0 0 1 1 0  DG 59 I DC 60 I DT 64 I DA 133 I DG 134 I DC 155
J DC 156 J DG 227 J DA 228 J DA 229 J DC 230 J
9 2.03 2.03 50.8 -2.18 -0.63 25.5 76 6 2 1 0 1 1 0  DT 48 I DG 59 I DC 60 I DT 64 I DA 165 J DG 227 J
DA 228 J DA 229 J DC 230 J DT 238 J DT 239 J DG
240 J
10 2.60 2.79 54.1 -1.46 -0.70 11.8 91 4 0 6 2 0 0 0  DA 42 I DA 43 I DT 48 I DA 165 J DT 239 J DG 240
J DG 249 J DT 250 J
11 1.82 1.82 66.1 -1.39 -0.69 14.3 92 5 0 5 2 0 0 0  DT 48 I DA 165 J DA 173 J DA 174 J DA 175 J DT
239 J DG 240 J DG 249 J DT 250 J DT 251 J
12 2.81 3.70 73.6 -2.38 -0.47 25.3 79 12 3 6 2 2 2 0  DA 102 I DC 195 J
13 2.57 2.62 79.3 -1.72 -0.71 21.9 81 7 3 4 2 0 1 0  DT 37 I DT 38 I DA 102 I DA 113 I DC 114 I DA 173
J DA 174 J DA 175 J DG 185 J DC 195 J DT 250 J DT
251 J DT 252 J DC 260 J
14 2.65 2.83 93.4 -1.91 -0.65 19.5 84 11 1 7 2 1 0 0  DT 48 I DA 165 J DT 239 J DG 240 J DC 247 J DA
248 J DG 249 J DT 250 J
15 1.67 3.64 105.5 -2.25 -0.50 24.4 81 13 2 7 4 3 1 0  DT 48 I DA 165 J DT 239 J DG 240 J DG 249 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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