spacer
spacer

PDBsum entry 3azh

Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 3azh calculated with MOLE 2.0 PDB id
3azh
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.60 2.60 30.9 -1.23 -0.73 13.7 87 2 0 1 0 0 0 0  DA 28 I DA 102 I DG 103 I DT 104 I DT 105 I DG
185 J DT 194 J DC 195 J DG 271 J
2 1.45 1.50 34.4 -1.68 -0.51 16.9 79 4 0 0 1 0 1 0  DG 71 I DA 72 I DT 74 I DT 80 I DG 81 I DG 214 J
DC 215 J DT 216 J DG 217 J DT 226 J DA 291 J DT
292 J
3 3.12 3.23 35.2 -1.31 -0.41 15.9 84 3 1 4 2 0 0 0  DC 89 I DT 90 I DT 91 I DT 92 I DT 93 I DT 198 J
DC 199 J DA 201 J DT 208 J DG 209 J
4 2.77 2.86 39.7 -1.26 -0.67 12.5 93 3 0 4 2 0 0 0  DG 18 I DA 28 I DT 92 I DA 102 I DG 103 I DT 104
I DT 105 I DG 185 J DC 195 J
5 1.15 1.15 49.6 -1.85 -0.53 24.0 82 6 1 0 2 0 1 0  DA 7 I DT 8 I DC 9 I DT 80 I DG 81 I DA 82 I DA
83 I DC 84 I DC 206 J DG 214 J DG 280 J DG 281 J
DT 282 J DA 291 J DT 292 J MN 1004 J
6 1.80 1.90 64.6 -1.71 -0.51 17.9 76 7 0 1 1 0 2 0  DT 8 I DC 9 I DC 10 I DG 71 I DA 72 I DT 74 I DC
215 J DT 216 J DG 217 J DT 226 J DG 280 J DG 281
J DT 282 J DT 288 J DT 289 J DG 290 J MN 1004 J
7 2.81 2.81 69.5 -1.36 -0.76 16.1 81 5 2 1 0 0 0 0  DA 28 I DT 37 I DT 38 I DG 39 I DG 46 I DA 113 I
DC 114 I DA 124 I DA 173 J DA 174 J DA 175 J DG
185 J DT 250 J DT 251 J DT 252 J DC 260 J DA 261 J
8 2.49 2.49 70.8 -1.90 -0.43 20.9 81 8 1 4 1 2 0 0  DC 69 I DT 70 I DA 102 I DT 194 J DC 195 J DA 219
J DT 220 J DT 221 J DG 271 J
9 2.47 2.46 72.7 -1.86 -0.54 17.9 89 8 1 8 2 2 0 0  DG 18 I DC 69 I DT 70 I DT 92 I DC 195 J DA 219 J
DT 220 J DT 221 J
10 3.14 3.47 89.1 -1.60 -0.58 18.2 74 5 0 1 1 0 2 0  DG 58 I DG 59 I DG 68 I DC 69 I DC 132 I DA 133 I
DG 134 I DA 141 I DT 142 I DT 143 I MN 1003 I DT
148 J DC 156 J DA 157 J DA 163 J DT 239 J DG 240 J
11 2.87 3.03 90.7 -2.65 -0.58 33.8 81 11 5 3 2 1 0 0  DC 69 I DT 70 I DA 102 I DG 103 I DT 104 I DT 105
I DG 185 J DG 186 J DA 187 J DA 188 J DA 189 J DC
190 J DA 219 J DT 220 J DT 221 J
12 2.40 2.96 96.7 -1.83 -0.42 17.9 87 8 2 12 3 6 0 0  DG 18 I DT 48 I DT 92 I DT 123 I DA 124 I DG 125
I DT 166 J DC 195 J DG 249 J
13 2.41 2.57 105.1 -1.29 -0.77 14.7 90 5 2 4 0 0 0 0  DA 28 I DT 37 I DT 38 I DG 39 I DT 48 I DA 113 I
DC 114 I DT 123 I DA 133 I DG 134 I DA 163 J DG
164 J DA 165 J DA 175 J DG 185 J DT 239 J DG 240
J DG 249 J DT 250 J DT 251 J DC 260 J DA 261 J
14 3.21 3.50 107.6 -1.47 -0.67 15.9 86 6 1 6 2 0 2 0  DT 48 I DG 68 I DC 69 I DA 124 I DG 125 I DC 132
I DA 133 I DA 141 I DT 142 I DT 143 I MN 1003 I
DT 148 J DC 156 J DA 157 J DA 165 J DT 166 J DT
239 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer