spacer
spacer

PDBsum entry 3axk

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3axk calculated with MOLE 2.0 PDB id
3axk
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
11 tunnels, coloured by tunnel radius 11 tunnels, coloured by tunnel radius 11 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.79 13.1 0.54 0.10 6.2 63 2 0 0 3 2 1 0  
2 1.80 19.2 0.17 0.26 9.3 62 2 1 0 4 3 2 0  
3 1.47 13.5 -0.32 -0.08 10.2 72 2 2 0 1 2 0 0  
4 2.41 8.1 -0.79 -0.10 3.4 80 0 1 2 3 1 0 0  
5 1.29 10.9 -1.52 0.03 18.2 68 1 1 1 1 1 0 0  
6 1.80 7.2 0.64 0.23 17.3 79 0 2 1 2 0 0 2  
7 1.86 7.4 0.56 0.20 18.0 79 0 2 1 2 0 0 3  
8 2.28 8.7 -0.70 -0.68 6.1 69 1 0 1 0 0 1 1  
9 1.65 8.7 -2.24 -0.37 22.4 69 2 1 0 0 1 1 0  
10 1.64 10.0 -2.34 -0.09 22.0 76 3 1 0 1 1 1 0  
11 1.88 5.0 -0.23 0.04 11.4 64 1 1 0 2 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer