PDBsum entry 3arg

Pore analysis for: 3arg calculated with

MOLE 2.0

PDB id

3arg

Pores calculated on whole structure

Pores calculated excluding ligands

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15 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.65

3.22

27.6

0.46

0.25

7.4

81

1

1

0

5

2

1

0

DB6 650 A

2

1.24

1.25

30.0

-1.16

-0.18

16.8

73

3

2

2

3

4

0

0

3

3.44

3.44

32.3

-1.38

-0.67

17.3

87

2

4

1

1

1

1

0

4

2.54

2.71

37.9

-1.24

-0.49

7.5

83

2

1

5

1

0

2

1

5

1.11

1.35

40.4

0.51

0.14

7.4

84

1

1

3

6

4

1

1

6

1.42

1.42

43.2

-1.67

-0.82

6.1

87

1

1

6

1

0

2

0

7

1.13

1.36

54.3

0.09

-0.10

6.3

87

1

1

7

6

4

1

0

8

1.14

1.36

55.6

-0.42

-0.19

8.6

84

2

1

7

5

4

2

0

9

1.31

1.51

72.0

-0.94

-0.30

17.8

80

3

4

4

5

3

0

0

10

1.13

1.13

109.2

-1.06

-0.50

11.2

82

5

5

7

6

5

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.