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PDBsum entry 3arf

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protein ligands Protein-protein interface(s) links
Immune system PDB id
3arf

 

 

 

 

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Contents
Protein chains
293 a.a.
99 a.a.
203 a.a.
235 a.a.
Ligands
NAG-NAG ×3
DB3
Waters ×35
PDB id:
3arf
Name: Immune system
Title: Ternary crystal structure of the mouse nkt tcr-cd1d-c20:2
Structure: Antigen-presenting glycoprotein cd1d1. Chain: a. Fragment: heavy chain. Engineered: yes. Beta-2-microglobulin. Chain: b. Engineered: yes. Nkt valpha14-jalpha18,nkt valpha14-jalpha18. Chain: c.
Source: Mus musculus. Mouse. Organism_taxid: 10090. Gene: cd1d1, cd1.1. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Gene: b2m. Mus musculus, homo sapiens. Mouse, human.
Resolution:
2.90Å     R-factor:   0.227     R-free:   0.277
Authors: K.S.Wun,J.Rossjohn
Key ref: K.S.Wun et al. (2011). A molecular basis for the exquisite CD1d-restricted antigen specificity and functional responses of natural killer T cells. Immunity, 34, 327-339. PubMed id: 21376639
Date:
27-Nov-10     Release date:   30-Mar-11    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P11609  (CD1D1_MOUSE) -  Antigen-presenting glycoprotein CD1d1 from Mus musculus
Seq:
Struc:
336 a.a.
293 a.a.*
Protein chain
Pfam   ArchSchema ?
P01887  (B2MG_MOUSE) -  Beta-2-microglobulin from Mus musculus
Seq:
Struc:
119 a.a.
99 a.a.
Protein chain
Pfam   ArchSchema ?
P01848  (TCA_HUMAN) -  T cell receptor alpha chain constant from Homo sapiens
Seq:
Struc:
140 a.a.
203 a.a.*
Protein chain
Pfam   ArchSchema ?
P01850  (TRBC1_HUMAN) -  T cell receptor beta constant 1 from Homo sapiens
Seq:
Struc:
176 a.a.
235 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 28 residue positions (black crosses)

 

 
Immunity 34:327-339 (2011)
PubMed id: 21376639  
 
 
A molecular basis for the exquisite CD1d-restricted antigen specificity and functional responses of natural killer T cells.
K.S.Wun, G.Cameron, O.Patel, S.S.Pang, D.G.Pellicci, L.C.Sullivan, S.Keshipeddy, M.H.Young, A.P.Uldrich, M.S.Thakur, S.K.Richardson, A.R.Howell, P.A.Illarionov, A.G.Brooks, G.S.Besra, J.McCluskey, L.Gapin, S.A.Porcelli, D.I.Godfrey, J.Rossjohn.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
23334244 P.J.Brennan, M.Brigl, and M.B.Brenner (2013).
Invariant natural killer T cells: an innate activation scheme linked to diverse effector functions.
  Nat Rev Immunol, 13, 101-117.  
23154222 J.Rossjohn, D.G.Pellicci, O.Patel, L.Gapin, and D.I.Godfrey (2012).
Recognition of CD1d-restricted antigens by natural killer T cells.
  Nat Rev Immunol, 12, 845-857.  
21435579 E.J.Adams, and J.López-Sagaseta (2011).
The immutable recognition of CD1d.
  Immunity, 34, 281-283.  
21552205 S.Aspeslagh, Y.Li, E.D.Yu, N.Pauwels, M.Trappeniers, E.Girardi, T.Decruy, K.Van Beneden, K.Venken, M.Drennan, L.Leybaert, J.Wang, R.W.Franck, S.Van Calenbergh, D.M.Zajonc, and D.Elewaut (2011).
Galactose-modified iNKT cell agonists stabilized by an induced fit of CD1d prevent tumour metastasis.
  EMBO J, 30, 2294-2305.
PDB codes: 3qux 3quy 3quz
21376640 T.Mallevaey, A.J.Clarke, J.P.Scott-Browne, M.H.Young, L.C.Roisman, D.G.Pellicci, O.Patel, J.P.Vivian, J.L.Matsuda, J.McCluskey, D.I.Godfrey, P.Marrack, J.Rossjohn, and L.Gapin (2011).
A molecular basis for NKT cell recognition of CD1d-self-antigen.
  Immunity, 34, 315-326.
PDB codes: 3au1 3qi9
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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