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PDBsum entry 3aoi

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Top Page protein dna_rna metals Protein-protein interface(s) links
Transcription, transferase/DNA/RNA PDB id
3aoi
Contents
Protein chains
(+ 0 more) 223 a.a.
1083 a.a.
1316 a.a.
93 a.a.
154 a.a.
DNA/RNA
Metals
_MG ×3
_ZN ×3
procheck   Generate full PROCHECK analyses

PROCHECK summary for 3aoi

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         6508       81.9%*  
Additional allowed regions [a,b,l,p]       1367       17.2%          
Generously allowed regions [~a,~b,~l,~p]     68        0.9%          
Disallowed regions         [XX]               1        0.0%*  
                                           ----      ------
Non-glycine and non-proline residues       7944      100.0%

End-residues (excl. Gly and Pro)             60

Glycine residues                            702
Proline residues                            524
                                           ----
Total number of residues                   9230


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.79*     
     Chi1-chi2 distribution          -1.01**
     Chi1 only                       -0.31      
     Chi3 & chi4                      0.35      
     Omega                            0.52      
                                                  -0.25      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.57      
     Main-chain bond angles           0.28      
                                                   0.40      
                                                  =====

     OVERALL AVERAGE                               0.01      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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