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PDBsum entry 3aoi

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3aoi calculated with MOLE 2.0 PDB id
3aoi
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.25 2.02 60.8 -0.05 0.05 13.9 88 7 2 3 12 1 1 0  
2 1.20 1.18 93.1 -0.20 -0.06 15.6 88 7 5 3 14 0 2 0  
3 1.33 1.44 25.2 -0.25 0.03 13.8 86 2 2 2 9 1 0 0  
4 1.19 1.43 16.1 1.71 0.69 9.6 74 2 1 0 5 2 0 0  
5 1.28 2.68 15.9 1.67 0.63 9.2 68 1 1 0 5 0 0 0  
6 1.15 2.05 15.0 1.75 0.56 8.1 73 1 1 0 5 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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