PDBsum entry 3ah8 Go to PDB code:  Tunnel analysis for: 3ah8 calculated with MOLE 2.0 PDB id 3ah8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.40 17.4 -1.70 -0.85 18.9 93 1 3 3 2 0 0 0   2 1.31 1.38 26.5 -2.15 -0.89 19.0 91 4 3 4 2 0 0 0   3 1.36 1.55 28.1 -1.93 -0.59 25.0 85 4 4 5 3 1 0 0   4 1.35 1.73 28.4 -2.31 -0.72 25.4 88 4 4 5 2 1 0 0   5 1.43 1.43 16.7 -1.14 -0.33 20.4 82 3 1 2 2 0 0 0   6 1.49 1.50 17.2 -0.29 -0.35 8.5 65 2 0 1 1 1 0 1   7 1.50 1.53 18.8 -0.87 -0.21 13.1 71 2 0 1 3 1 0 1   8 1.42 1.40 21.8 -0.80 -0.22 13.4 81 2 1 1 4 0 0 0   9 1.50 1.53 22.4 -1.44 -0.35 19.9 74 4 1 2 2 1 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.