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Ligand clusters for UniProt code P00415

Ligand clusters for P00415: Cytochrome c oxidase subunit 3 OS=Bos taurus GN=MT-CO3 PE=1 SV=2

5 ligand clusters
Cluster 1.
10 ligand types
100 ligands
Cluster 2.
7 ligand types
53 ligands
Cluster 3.
6 ligand types
61 ligands
Cluster 4.
1 ligand type
21 ligands
Cluster 5.
3 ligand types
6 ligands
Representative protein: 1v54C  
 

Structures

PDB   Schematic diagram
1v54C    
3ag1C    
3ag3C    
3abmC    
3asoC    
 more ...

 

 Cluster 1 contains 10 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 1
PDB code: 2ein(C).


 
2. Ligand: DMU × 7
Decyl-Beta-D-Maltopyranoside
PDB codes: 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
3. Ligand: PGV × 18
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C),


 
4. Ligand: PEK × 9
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
5. Ligand: CDL × 9
Cardiolipin
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
6. Ligand: PGV × 24
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy} (hydroxy)phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl] ethyl (11e)-Octadec-11-Enoate
PDB codes: 2y69(C), 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C),


 
7. Ligand: PEK × 12
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl] oxy}-1-[(Stearoyloxy)methyl]ethyl (5e,8e,11e, 14e)-
Icosa-5,8,11,14-Tetraenoate
PDB codes: 2y69(C), 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C).


 
8. Ligand: CDL × 11
Cardiolipin
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C).


 
9. Ligand: DMU × 8
Decyl-Beta-D-Maltopyranoside
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C).


 
10. Ligand: DCW × 1
Dicyclohexylurea
PDB code: 2dys(C).

 

 Cluster 2 contains 7 ligand types

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Ligand Description


 
1. Ligand: CHD × 1
Cholic acid
PDB code: 1v55(C).


 
2. Ligand: PEK × 9
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
3. Ligand: PGV × 4
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 2dyr(C), 2eij(C), 2eik(C), 2eim(C).


 
4. Ligand: CDL × 20
Cardiolipin
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C), 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C).


 
5. Ligand: PEK × 11
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C).


 
6. Ligand: PGV × 3
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 3abm(C), 3asn(C), 3aso(C).


 
7. Ligand: CHD × 5
Cholic acid
PDB codes: 2y69(C), 3abl(C), 3asn(C), 3aso(C), 3wg7(C).

 

 Cluster 3 contains 6 ligand types

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Ligand Description


 
1. Ligand: CHD × 9
Cholic acid
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
2. Ligand: PEK × 9
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
3. Ligand: PGV × 9
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
4. Ligand: CHD × 12
Cholic acid
PDB codes: 2y69(C), 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C).


 
5. Ligand: PEK × 11
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C).


 
6. Ligand: PGV × 11
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: CHD × 21
Cholic acid
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C), 2y69(C), 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C).

 

 Cluster 5 contains 3 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 3
PDB codes: 2eij(C), 2eim(C), 2ein(C).

_Cd
 
2. Metal: _CD × 2
PDB codes: 2eik(C), 2eil(C).

_Na
 
3. Metal: _NA × 1
PDB code: 3wg7(C).

 

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