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PDBsum entry 3adb
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Pore analysis for: 3adb calculated with  MOLE 2.0
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PDB id
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3adb
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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18 pores,
coloured by radius |
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19 pores,
coloured by radius
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19 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.45 |
2.45 |
27.8 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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C 8 C A 9 C C 20 C i:A U 20 C C 44 C G 45 C C 46
C G 47 C i:I G 47 C U 47 C i:H C 47 C i:A G 47 C
i:J G 47 C i:K G 47 C i:L C 47 C i:M G 47 C i:N C
48 C G 53 C U 55 C A 57 C A 58 C U 59 C
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2 |
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2.29 |
2.27 |
65.1 |
-1.01 |
-0.75 |
8.3 |
91 |
3 |
0 |
3 |
1 |
0 |
0 |
0 |
C 8 C A 9 C C 10 C C 20 C i:A C 21 C C 22 C C 23
C G 24 C G 25 C G 26 C C 40 C G 43 C C 44 C G 45
C C 46 C C 47 C i:M G 47 C i:L G 47 C i:K G 47 C
i:J G 47 C i:I G 47 C
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3 |
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2.34 |
2.34 |
69.3 |
-1.04 |
-0.75 |
8.2 |
91 |
3 |
0 |
3 |
1 |
0 |
0 |
0 |
C 8 C A 9 C C 10 C C 20 C i:A U 20 C C 21 C C 22
C C 23 C G 24 C G 25 C G 26 C C 40 C G 43 C C 44
C G 45 C C 47 C i:M G 47 C i:N C 48 C G 53 C U 55
C A 57 C A 58 C U 59 C
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4 |
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1.99 |
2.25 |
127.0 |
-1.29 |
-0.36 |
13.7 |
78 |
5 |
2 |
3 |
2 |
3 |
1 |
0 |
G 1 C G 2 C C 3 C C 4 C C 5 C i:A C 5 C i:B C 7 C
G 47 C i:N C 48 C G 50 C G 51 C G 52 C G 53 C U
55 C A 57 C A 58 C U 59 C U 60 C C 62 C C 63 C C
64 C G 66 C G 67 C i:B G 67 C i:A C 67 C C 68 C G
73 C C 74 C C 75 C A 76 C
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5 |
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1.51 |
1.68 |
182.3 |
-0.88 |
-0.39 |
12.4 |
74 |
9 |
3 |
3 |
7 |
5 |
1 |
0 |
MSE 128 A G 1 C G 6 C A 9 C C 10 C C 11 C G 12 C
G 13 C C 21 C C 22 C C 23 C G 24 C G 25 C G 26 C
C 40 C G 43 C C 44 C G 67 C i:A C 67 C G 67 C i:B
G 73 C C 74 C C 75 C A 76 C
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6 |
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1.93 |
1.92 |
198.6 |
-1.16 |
-0.49 |
13.9 |
79 |
9 |
3 |
4 |
5 |
2 |
1 |
0 |
G 1 C G 6 C A 9 C C 10 C C 11 C G 12 C G 13 C C
21 C C 22 C C 23 C G 24 C G 25 C G 26 C C 40 C G
43 C C 44 C G 66 C G 67 C i:A C 67 C G 67 C i:B G
73 C C 74 C C 75 C A 76 C
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7 |
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1.99 |
1.99 |
26.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 5 D i:B C 5 D i:A C 7 D G 14 D G 15 D U 16 D C
47 D i:M G 47 D i:N C 48 D G 50 D G 51 D G 52 D G
53 D U 55 D A 57 D A 58 D U 60 D C 61 D C 62 D C
63 D C 64 D
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8 |
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2.53 |
2.53 |
29.9 |
-0.62 |
-0.77 |
6.3 |
72 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
U 20 D C 20 D i:A C 44 D G 45 D C 46 D C 47 D i:M
G 47 D i:N G 47 D i:L G 47 D i:K G 47 D i:J G 47
D i:I C 47 D i:B G 47 D G 47 D i:E C 48 D G 52 D
A 57 D
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9 |
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2.47 |
2.47 |
32.2 |
-1.08 |
-0.72 |
12.3 |
72 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 6 D C 7 D A 9 D C 10 D C 11 D G 12 D G 13 D C
21 D C 22 D C 23 D G 24 D G 25 D G 26 D C 40 D C
41 D G 43 D C 44 D G 67 D i:A
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10 |
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2.53 |
2.53 |
35.8 |
-0.55 |
-0.78 |
5.3 |
72 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
U 20 D C 20 D i:A G 29 D G 43 D C 44 D G 45 D C
46 D C 47 D i:M G 47 D i:N G 47 D i:L G 47 D i:K
G 47 D i:J G 47 D i:I C 48 D G 52 D A 57 D
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11 |
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1.66 |
1.66 |
36.2 |
-1.02 |
-0.73 |
11.5 |
72 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
C 5 D i:B G 6 D C 7 D C 8 D A 9 D C 10 D G 13 D G
14 D C 21 D C 22 D C 23 D G 24 D G 25 D G 26 D C
40 D C 41 D G 43 D C 44 D G 69 D G 70 D
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12 |
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2.22 |
2.22 |
36.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 6 D C 7 D C 8 D A 9 D C 10 D C 11 D G 12 D G 13
D G 14 D C 20 D i:A C 21 D C 22 D C 44 D G 45 D C
46 D G 47 D i:E C 47 D i:A G 47 D C 47 D i:B G 47
D i:I G 47 D i:K G 47 D i:J G 47 D i:L G 67 D i:A
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13 |
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3.12 |
3.42 |
37.3 |
-1.16 |
-0.71 |
13.4 |
72 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
C 20 D i:A C 21 D C 22 D C 23 D G 24 D C 40 D C
41 D G 43 D C 44 D G 45 D C 46 D G 47 D i:E C 47
D i:A G 47 D C 47 D i:B G 47 D i:I G 47 D i:K G
47 D i:J G 47 D i:L
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14 |
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1.97 |
1.97 |
41.1 |
-0.83 |
-0.75 |
9.0 |
72 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
C 5 D i:A C 5 D i:B G 6 D C 7 D C 8 D A 9 D C 10
D G 13 D G 14 D G 15 D U 16 D C 20 D i:A C 21 D C
22 D C 23 D G 24 D G 25 D G 26 D C 40 D C 41 D G
43 D C 44 D U 59 D U 60 D C 61 D
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15 |
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2.47 |
2.47 |
43.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 6 D C 7 D C 8 D A 9 D C 10 D C 11 D G 12 D G 13
D G 14 D C 20 D i:A C 21 D C 22 D G 29 D G 43 D C
44 D G 45 D C 46 D G 47 D i:L G 47 D i:K G 47 D i:
J G 47 D i:I G 67 D i:A
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16 |
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1.98 |
1.98 |
43.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 5 D i:B C 5 D i:A G 6 D C 7 D C 8 D A 9 D C 10
D G 13 D G 14 D G 15 D U 16 D C 20 D i:A C 21 D C
22 D C 44 D G 45 D C 46 D G 47 D i:E C 47 D i:A G
47 D C 47 D i:B G 47 D i:I G 47 D i:K G 47 D i:J
G 47 D i:L U 59 D U 60 D C 61 D
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17 |
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3.12 |
3.42 |
43.9 |
-1.12 |
-0.72 |
12.9 |
72 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
C 20 D i:A C 21 D C 22 D C 23 D G 24 D G 29 D C
40 D C 41 D G 42 D G 43 D C 44 D G 47 D i:J G 47
D i:I G 47 D i:K
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18 |
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1.97 |
1.97 |
56.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 5 D i:B C 5 D i:A G 6 D C 7 D C 8 D A 9 D C 10
D G 13 D G 14 D G 15 D U 16 D C 20 D i:A C 21 D C
22 D G 29 D G 42 D G 43 D C 44 D G 45 D C 46 D G
47 D i:J G 47 D i:I G 47 D i:K G 47 D i:L U 59 D
U 60 D C 61 D
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19 |
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1.42 |
1.42 |
60.2 |
-0.54 |
-0.78 |
5.2 |
72 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
C 5 D i:B G 6 D C 7 D C 8 D A 9 D C 10 D G 13 D G
14 D U 20 D C 20 D i:A C 21 D C 22 D C 44 D G 45
D C 47 D i:M G 47 D i:N G 47 D i:L C 48 D G 52 D
A 57 D G 69 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program