PDBsum entry 3aad

Tunnel analysis for: 3aad calculated with

MOLE 2.0

PDB id

3aad

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.30

1.54

22.4

0.07

-0.09

8.5

79

1

2

1

4

3

1

0

2

1.31

1.97

24.9

0.11

-0.07

7.6

77

1

2

1

4

4

1

0

3

1.13

2.42

52.3

-0.18

0.23

15.0

80

6

4

3

9

3

0

0

4

1.24

1.37

17.4

1.26

0.32

6.7

70

0

2

0

9

3

1

0

5

1.24

2.93

18.7

1.64

0.46

5.9

71

0

2

0

9

4

1

0

6

1.29

1.29

19.2

1.11

0.48

1.6

79

0

1

4

10

3

2

0

7

1.34

1.60

22.1

1.23

0.54

1.5

78

0

1

4

12

2

2

0

8

1.23

2.92

23.4

1.38

0.61

1.4

79

0

1

3

12

2

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.