PDBsum entry 3a9c Go to PDB code:  Pore analysis for: 3a9c calculated with MOLE 2.0 PDB id 3a9c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   21 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 4.54 4.99 25.9 0.94 0.15 6.5 100 2 1 4 4 0 0 0   2 4.90 5.77 29.3 1.47 0.57 7.2 94 2 1 5 5 2 0 0   3 4.87 5.83 29.8 0.81 0.26 10.7 95 2 2 4 5 1 0 0   4 4.55 4.86 31.1 1.20 0.19 3.5 97 1 1 5 4 1 0 0   5 1.50 1.60 31.8 0.18 -0.20 10.9 82 2 2 1 6 0 0 0  PEG 402 F 6 4.16 5.06 42.2 -0.56 -0.11 17.1 94 4 2 5 3 1 0 0   7 4.17 5.05 44.9 -0.16 0.23 18.7 89 5 3 5 4 3 0 0   8 1.82 2.01 47.6 -1.62 -0.39 23.8 79 4 4 2 3 2 1 0   9 1.40 2.26 60.8 -1.78 -0.16 22.3 73 4 10 0 4 4 0 0  MG 411 A PEG 402 C 10 1.52 1.55 62.4 -1.58 -0.36 22.4 67 5 7 0 4 5 1 0  PEG 402 A PEG 402 C 11 2.22 4.27 84.1 -1.51 -0.20 27.8 84 11 5 5 5 4 0 0  RUB 401 A 12 1.55 2.15 84.9 -0.88 -0.07 15.8 76 5 8 3 7 6 1 0  PEG 402 F 13 1.39 2.31 89.5 -2.04 -0.15 27.9 74 11 11 2 7 8 1 0  MG 411 A PEG 402 F 14 1.47 1.47 93.4 -0.73 -0.32 18.3 78 4 7 0 7 2 1 0   15 1.54 2.22 103.7 -1.72 -0.07 25.3 76 14 8 3 8 8 0 0  PEG 402 C 16 1.44 2.29 107.3 -2.05 -0.07 26.8 76 13 13 2 7 10 0 0  MG 411 A 17 1.57 1.63 115.9 -1.74 -0.37 26.7 74 13 9 2 7 5 1 0  RUB 401 A PEG 402 C PEG 402 E 18 1.98 3.74 132.6 -1.29 -0.24 20.6 72 7 15 2 7 7 5 0  PEG 402 D PEG 402 F 19 1.52 1.58 137.0 -1.85 -0.25 28.5 75 17 9 4 10 8 2 0  RUB 401 A PEG 402 E PEG 402 F 20 1.66 1.83 134.3 -1.45 -0.17 25.4 74 14 12 1 8 7 1 0  PEG 402 C PEG 402 D 21 1.46 2.37 151.4 -1.93 -0.12 29.3 78 20 13 5 9 9 2 0  RUB 401 A MG 411 B PEG 402 E 22 1.51 2.25 154.8 -1.90 -0.18 27.2 76 19 11 4 10 10 1 0  RUB 401 A PEG 402 E 23 1.75 1.95 181.6 -1.52 -0.22 26.0 75 18 15 2 10 8 2 0  RUB 401 A PEG 402 D PEG 402 E Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.