PDBsum entry 3a5c Go to PDB code:  Tunnel analysis for: 3a5c calculated with MOLE 2.0 PDB id 3a5c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   156 tunnels, coloured by tunnel radius 76 tunnels, coloured by tunnel radius 76 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.24 2.43 33.2 -1.18 -0.50 11.8 80 3 3 4 3 2 0 0  ADP 600 I 2 1.58 1.57 35.9 -0.27 -0.20 9.7 81 2 3 0 6 0 4 1   3 2.21 2.20 36.2 -1.39 -0.70 16.1 74 2 6 1 1 1 2 0   4 1.57 1.57 36.5 -1.26 -0.44 13.8 83 2 5 3 4 1 3 0   5 2.03 3.12 37.7 0.20 0.00 6.2 78 1 2 2 6 4 1 0  ADP 600 I 6 1.56 2.58 41.8 -1.29 -0.43 14.2 84 2 5 4 2 1 2 0   7 1.58 1.58 43.8 -0.48 -0.06 12.4 75 4 4 0 5 2 4 1   8 1.57 1.57 43.9 -0.16 -0.09 11.6 78 2 2 1 6 2 2 1   9 2.22 2.60 44.5 0.31 -0.05 5.8 76 1 2 3 8 4 0 0  ADP 600 I 10 1.58 1.57 45.0 -0.34 -0.04 10.8 75 3 4 0 5 2 4 1   11 1.55 2.39 47.2 -1.26 -0.53 12.5 85 3 4 4 3 1 3 0   12 1.57 1.57 48.2 -0.09 -0.10 10.3 79 2 3 1 7 2 2 1   13 1.57 1.57 48.8 -0.96 -0.55 11.9 88 6 3 1 6 0 3 0   14 1.57 1.57 50.3 0.51 0.11 8.0 81 2 2 1 11 2 2 1   15 1.69 1.69 50.4 -0.83 -0.34 16.3 80 5 4 1 8 1 2 0   16 1.85 1.85 51.3 -0.66 -0.49 9.3 79 3 3 1 7 5 0 0   17 1.57 1.57 51.6 0.52 0.07 7.8 83 2 2 1 13 2 2 1   18 1.67 1.98 52.1 -1.06 -0.34 15.2 76 5 6 2 6 4 3 0   19 1.69 1.69 52.6 -0.75 -0.36 10.6 83 5 4 2 5 3 2 0   20 2.21 2.19 52.7 -0.26 -0.25 9.3 85 2 4 2 12 4 0 0   21 1.59 1.59 53.2 -1.23 -0.47 17.2 83 4 6 3 3 1 3 0   22 1.58 1.58 55.7 0.11 0.03 9.5 72 5 3 0 8 3 4 1   23 1.59 1.58 55.7 0.08 0.02 9.5 72 5 3 0 8 3 4 1   24 1.57 1.57 56.1 -1.01 -0.25 16.8 74 5 5 2 7 2 5 1   25 1.98 2.06 56.5 -0.07 -0.14 7.8 85 5 2 4 7 5 0 0  ADP 600 I 26 1.57 1.57 57.0 -0.97 -0.24 16.5 74 5 5 2 7 3 4 1   27 2.02 2.47 58.7 0.04 -0.12 6.0 82 3 1 5 9 7 1 0  ADP 600 I 28 1.60 1.60 59.0 -1.54 -0.53 20.9 79 6 8 2 3 1 4 0   29 2.25 2.42 59.7 -0.85 -0.30 11.8 81 3 4 4 5 5 0 0  ADP 600 I 30 1.60 1.60 60.0 -1.44 -0.46 23.7 81 6 9 2 6 1 2 0   31 1.70 1.70 60.2 -1.09 -0.41 17.5 86 6 5 4 7 1 1 0   32 1.69 1.69 61.1 -1.00 -0.48 13.9 87 4 5 6 5 1 2 0   33 1.71 1.71 61.5 -1.11 -0.39 14.8 83 7 4 4 8 1 3 0   34 1.58 1.58 63.0 -0.29 -0.10 14.6 77 5 7 2 12 3 3 2   35 1.58 1.58 62.8 -1.19 -0.53 15.8 84 5 9 4 5 0 3 1   36 1.57 1.57 64.1 -1.86 -0.56 20.7 86 7 9 7 3 0 3 1   37 1.69 1.69 67.1 -0.80 -0.32 13.0 79 5 3 2 9 3 3 0   38 1.57 1.57 67.0 -0.79 -0.40 15.1 83 5 11 5 7 1 3 1   39 1.57 1.57 69.6 -1.27 -0.49 20.1 82 8 10 3 7 0 2 1   40 1.71 1.71 69.9 -1.68 -0.58 18.5 81 8 5 5 5 1 2 0   41 1.37 1.52 72.9 -0.16 -0.13 10.8 78 4 5 3 13 4 3 1   42 1.60 1.59 73.0 -1.27 -0.36 20.2 81 6 9 3 6 2 4 0   43 1.57 1.57 77.6 -1.03 -0.40 16.5 83 6 10 4 8 1 4 1   44 1.61 1.60 79.1 -1.51 -0.42 17.5 86 6 9 10 4 2 3 0   45 1.25 1.34 79.8 -1.01 -0.43 13.8 81 8 5 2 8 2 3 0   46 1.33 1.77 80.5 -0.42 -0.10 16.9 77 4 9 4 12 5 4 0   47 1.59 1.59 82.3 -1.17 -0.46 17.4 87 7 8 6 7 1 3 0   48 1.58 1.57 83.0 -1.55 -0.53 17.1 85 7 12 11 4 1 4 1   49 1.59 1.59 82.4 -1.57 -0.41 22.3 82 8 11 7 8 1 2 0   50 2.00 2.19 84.0 -0.49 -0.22 12.1 81 4 7 5 10 3 3 1   51 1.59 1.59 84.0 -1.53 -0.53 21.0 84 9 12 4 7 1 4 0   52 1.63 1.82 85.5 -0.55 -0.25 14.0 82 6 6 5 14 3 2 0   53 1.60 1.59 84.9 -1.91 -0.53 25.0 80 10 11 6 6 1 2 0   54 1.60 1.59 85.9 -1.74 -0.48 24.7 81 9 11 6 8 1 2 0   55 1.66 1.77 87.9 -0.76 -0.28 15.0 80 7 6 5 11 3 3 0   56 1.60 1.60 87.5 -0.45 -0.25 12.4 79 5 7 5 11 3 4 0  ADP 600 A 57 1.61 1.60 88.2 -1.35 -0.42 18.9 83 8 9 6 5 3 3 0   58 1.60 1.59 91.2 -1.44 -0.34 20.2 78 9 10 6 9 4 6 0   59 1.59 1.59 90.9 -0.49 -0.32 11.8 81 4 9 6 10 3 4 0  ADP 600 C 60 1.61 1.60 91.2 -1.15 -0.31 19.9 84 8 15 7 10 4 3 0   61 1.61 1.60 91.8 -1.16 -0.35 15.3 84 8 8 7 8 4 4 0   62 1.58 1.58 94.1 -1.23 -0.42 17.1 81 11 13 7 9 4 4 1   63 1.60 1.59 92.7 -0.62 -0.05 15.8 78 8 10 6 16 4 2 0   64 1.58 1.57 93.3 -1.30 -0.39 19.9 83 10 11 6 9 0 3 1   65 1.60 1.69 94.1 -0.35 -0.07 14.2 83 6 9 6 14 3 3 1   66 1.58 1.58 95.4 -0.66 -0.24 13.9 83 7 10 7 12 2 4 2   67 1.61 1.79 95.5 -0.38 -0.20 11.1 81 5 7 5 12 4 3 1   68 1.38 1.43 95.8 -0.50 -0.15 13.9 83 8 7 6 13 3 4 1   69 1.60 1.59 98.4 -1.38 -0.58 18.1 86 10 14 6 9 0 4 1   70 1.57 1.57 98.5 -1.22 -0.40 16.6 84 9 11 7 7 2 3 1   71 1.57 1.57 99.7 -0.48 -0.30 13.0 82 6 8 5 14 0 3 1  ADP 600 I 72 1.57 1.57 100.2 -1.43 -0.44 21.7 83 10 12 7 9 0 2 1   73 1.59 1.58 103.8 -0.23 -0.01 13.7 81 10 10 7 17 3 2 1   74 1.57 1.57 106.9 -0.47 -0.20 12.5 83 8 10 7 14 3 4 2   75 1.35 1.60 116.2 -0.68 -0.11 17.3 80 7 12 7 17 5 3 0   76 1.47 1.87 124.3 -0.58 -0.17 16.4 82 8 13 7 18 4 3 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.