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PDBsum entry 3j00

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protein dna_rna ligands Protein-protein interface(s) links
Ribosome/ribosomal protein PDB id
3j00
Jmol
Contents
Protein chains
98 a.a.
200 a.a.
240 a.a.
232 a.a.
205 a.a.
166 a.a.
135 a.a.
178 a.a.
129 a.a.
129 a.a.
103 a.a.
128 a.a.
123 a.a.
117 a.a.
100 a.a.
88 a.a.
82 a.a.
83 a.a.
74 a.a.
91 a.a.
86 a.a.
70 a.a.
DNA/RNA
Ligands
PEV ×101
PGV ×32
PDB id:
3j00
Name: Ribosome/ribosomal protein
Title: Structure of the ribosome-secye complex in the membrane envi
Structure: 16s ribosomal RNA. Chain: a. mRNA. Chain: x. Ftsq nascent chain. Chain: v. Cell division protein ftsq. Chain: z. Synonym: cell division protein. Ingrowth of wall at septum.
Source: Escherichia coli. Organism_taxid: 562. Escherichia coli dh1. Ftsq nascent chain. Organism_taxid: 536056. Escherichia coli o157:h7. Organism_taxid: 83334. Synthetic: yes. Homo sapiens.
Authors: J.Frauenfeld,J.Gumbart,E.O.Van Der Sluis,S.Funes,M.Gartmann, B.Beatrix,T.Mielke,O.Berninghausen,T.Becker,K.Schulten,R.Be
Key ref: J.Frauenfeld et al. (2011). Cryo-EM structure of the ribosome-SecYE complex in the membrane environment. Nat Struct Mol Biol, 18, 614-621. PubMed id: 21499241
Date:
08-Feb-11     Release date:   20-Apr-11    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P06136  (FTSQ_ECOLI) -  Cell division protein FtsQ
Seq:
Struc:
276 a.a.
98 a.a.*
Protein chains
Pfam   ArchSchema ?
P02647  (APOA1_HUMAN) -  Apolipoprotein A-I
Seq:
Struc:
267 a.a.
200 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7V0  (RS2_ECOLI) -  30S ribosomal protein S2
Seq:
Struc:
241 a.a.
240 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7V3  (RS3_ECOLI) -  30S ribosomal protein S3
Seq:
Struc:
233 a.a.
232 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7V8  (RS4_ECOLI) -  30S ribosomal protein S4
Seq:
Struc:
206 a.a.
205 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7W1  (RS5_ECOLI) -  30S ribosomal protein S5
Seq:
Struc:
167 a.a.
166 a.a.
Protein chain
Pfam   ArchSchema ?
P02358  (RS6_ECOLI) -  30S ribosomal protein S6
Seq:
Struc:
135 a.a.
135 a.a.
Protein chain
Pfam   ArchSchema ?
P02359  (RS7_ECOLI) -  30S ribosomal protein S7
Seq:
Struc:
179 a.a.
178 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7W7  (RS8_ECOLI) -  30S ribosomal protein S8
Seq:
Struc:
130 a.a.
129 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7X3  (RS9_ECOLI) -  30S ribosomal protein S9
Seq:
Struc:
130 a.a.
129 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7R5  (RS10_ECOLI) -  30S ribosomal protein S10
Seq:
Struc:
103 a.a.
103 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7R9  (RS11_ECOLI) -  30S ribosomal protein S11
Seq:
Struc:
129 a.a.
128 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7S3  (RS12_ECOLI) -  30S ribosomal protein S12
Seq:
Struc:
124 a.a.
123 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7S9  (RS13_ECOLI) -  30S ribosomal protein S13
Seq:
Struc:
118 a.a.
117 a.a.
Protein chain
Pfam   ArchSchema ?
P0AG59  (RS14_ECOLI) -  30S ribosomal protein S14
Seq:
Struc:
101 a.a.
100 a.a.
Protein chain
Pfam   ArchSchema ?
P0ADZ4  (RS15_ECOLI) -  30S ribosomal protein S15
Seq:
Struc:
89 a.a.
88 a.a.*
Protein chain
Pfam   ArchSchema ?
P0A7T3  (RS16_ECOLI) -  30S ribosomal protein S16
Seq:
Struc:
82 a.a.
82 a.a.
Protein chain
Pfam   ArchSchema ?
P0AG63  (RS17_ECOLI) -  30S ribosomal protein S17
Seq:
Struc:
84 a.a.
83 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7T7  (RS18_ECOLI) -  30S ribosomal protein S18
Seq:
Struc:
75 a.a.
74 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7U3  (RS19_ECOLI) -  30S ribosomal protein S19
Seq:
Struc:
92 a.a.
91 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7U7  (RS20_ECOLI) -  30S ribosomal protein S20
Seq:
Struc:
87 a.a.
86 a.a.
Protein chain
Pfam   ArchSchema ?
P68679  (RS21_ECOLI) -  30S ribosomal protein S21
Seq:
Struc:
71 a.a.
70 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 14 residue positions (black crosses)

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     extracellular region   8 terms 
  Biological process     cytoplasmic translation   24 terms 
  Biochemical function     lipid binding     20 terms  

 

 
Nat Struct Mol Biol 18:614-621 (2011)
PubMed id: 21499241  
 
 
Cryo-EM structure of the ribosome-SecYE complex in the membrane environment.
J.Frauenfeld, J.Gumbart, E.O.Sluis, S.Funes, M.Gartmann, B.Beatrix, T.Mielke, O.Berninghausen, T.Becker, K.Schulten, R.Beckmann.
 
  ABSTRACT  
 
No abstract given.