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PDBsum entry 3c3c

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protein ligands metals Protein-protein interface(s) links
Transferase PDB id
3c3c
Jmol
Contents
Protein chain
403 a.a. *
Ligands
3PG ×2
CDP
Metals
_MG
Waters ×175
* Residue conservation analysis
PDB id:
3c3c
Name: Transferase
Title: Crystal structure of human phosphoglycerate kinase bound to 3-phosphoglycerate and l-cdp
Structure: Phosphoglycerate kinase 1. Chain: a, b. Synonym: 3-phosphoglycerate kinase, primer recognition protein 2, prp 2, cell migration-inducing gene 10 protein. Engineered: yes
Source: Homo sapiens. Human. Gene: pgk1. Expressed in: escherichia coli.
Resolution:
2.40Å     R-factor:   0.196     R-free:   0.281
Authors: S.T.Arold,C.Gondeau,C.Lionne,L.Chaloin
Date:
28-Jan-08     Release date:   01-Jul-08    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P00558  (PGK1_HUMAN) -  Phosphoglycerate kinase 1
Seq:
Struc:
417 a.a.
403 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.2.3  - Phosphoglycerate kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Calvin Cycle (carbon fixation stages)
      Reaction: ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate
ATP
+
3-phospho-D-glycerate
Bound ligand (Het Group name = 3PG)
corresponds exactly
=
ADP
Bound ligand (Het Group name = CDP)
matches with 85.00% similarity
+ 3-phospho-D-glyceroyl phosphate
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     membrane   4 terms 
  Biological process     small molecule metabolic process   7 terms 
  Biochemical function     nucleotide binding     6 terms