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Ligand clusters for UniProt code P00441

Ligand clusters for P00441: Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2

Top 6 (of 22) ligand clusters
Cluster 1.
10 ligand types
11 ligands
Cluster 2.
7 ligand types
10 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
7 ligand types
171 ligands
Cluster 5.
3 ligand types
4 ligands
Cluster 6.
3 ligand types
5 ligands
Representative protein: 1azvA  
 

Structures

PDB   Schematic diagram
1azvA    
3kh3A    
4a7sA    
2gbtA    
4b3eA    
 more ...

 

 Cluster 1 contains 10 ligand types

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Ligand Description


 
1. Ligand: ACT × 1
acetic acid
Acetate ion
PDB code: 2xjl(A).


 
2. Ligand: ALE × 1
epinephrine
L-Epinephrine
PDB code: 4a7u(A).


 
3. Ligand: LDP × 1
dopamine
L-Dopamine
PDB code: 4a7v(A).


 
4. Ligand: 5FW × 2
Isoprenaline
PDB codes: 4a7t(A),


 
5. Ligand: 12I × 1
4-(4-Methylpiperazin-1-Yl)quinazoline
PDB code: 4a7g(A).


 
6. Ligand: 4MQ × 1
4-(4-Methyl-1,4-Diazepan-1-Yl)quinazoline
PDB code: 4a7q(A).


 
7. Ligand: 5UD × 1
5-Fluorouridine
PDB code: 4a7s(A).


 
8. Ligand: MET × 1
PDB code: 2wz5(A).


 
9. Ligand: ZO0 × 1
4-(4-Methyl-1,4-Diazepan-1-Yl)-2-(Trifluoromethyl)quina
PDB code: 2wz6(A).


 
10. Ligand: ZZT × 1
2-Methoxy-5-Methylaniline
PDB code: 2wz0(A).

 

 Cluster 2 contains 7 ligand types

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Ligand Description


 
1. Ligand: ACT × 2
acetic acid
Acetate ion
PDB codes: 4a7g(A), 4a7t(A).


 
2. Ligand: ALE × 1
epinephrine
L-Epinephrine
PDB code: 4a7u(A).


 
3. Ligand: GOL × 3
Glycerol
PDB codes: 4bd4(F),


 
4. Ligand: 12I × 1
4-(4-Methylpiperazin-1-Yl)quinazoline
PDB code: 4a7g(A).


 
5. Ligand: PEG × 1
Di(hydroxyethyl)ether
PDB code: 2xjl(A).


 
6. Ligand: SO4 × 1
Sulfate ion
PDB code: 2c9s(A).

_Ca
 
7. Metal: _CA × 1
PDB code: 3gqf(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: MLI × 1
Malonate ion
PDB code: 3cqp(A).


 
2. Ligand: U5P × 1
Uridine-5'-Monophosphate
PDB code: 2wyz(A).

 

 Cluster 4 contains 7 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 78
PDB codes: 1azv(A), 1dsw(A), 1fun(A), 1hl4(A), 1hl5(A), 1l3n(A), 1mfm(A), 1n18(A), 1n19(A), 1oez(W), 1ozu(A), 1p1v(A), 1ptz(A), 1pu0(A), 1uxl(A), 1uxm(A), 2c9s(A), 2c9u(A), 2c9v(A), 2gbt(A), 2gbv(A), 2nnx(A), 2v0a(A), 2vr6(A), 2wyt(A), 2wyz(A), 2wz0(A), 2wz5(A), 2wz6(A), 2xjk(A), 2xjl(A), 2zkw(A), 2zkx(A), 2zky(A), 3cqp(A), 3cqq(A), 3gqf(A), 3gtv(A), 3h2p(A), 3h2q(A), 3hff(A), 3kh3(A), 3kh4(A), 3ltv(A), 3qqd(A), 3t5w(A), 4a7g(A), 4a7q(A), 4a7s(A), 4a7t(A), 4a7u(A), 4a7v(A), 4b3e(A), 4bcy(A), 4ff9(A), 4mcm(A), 4oh2(A).


 
2. Ligand: SO4 × 44
Sulfate ion
PDB codes: 1oez(W), 1ozu(A), 1p1v(A), 1uxl(A), 2c9s(A), 2c9u(A), 2c9v(A), 2v0a(A), 2vr6(A), 2wyt(A), 2wyz(A), 2wz0(A), 2wz5(A), 2wz6(A), 3gzq(A), 3h2q(A), 3qqd(A), 3t5w(A), 4a7g(A), 4a7q(A), 4a7s(A), 4a7t(A), 4a7u(A), 4a7v(A), 4mcm(A), 4mcn(A).

_Cu
 
3. Metal: _CU × 34
PDB codes: 1azv(A), 1dsw(A), 1fun(A), 1hl5(A), 1mfm(A), 1uxl(A), 1uxm(A), 2c9u(A), 2c9v(A), 2r27(A), 2v0a(A), 2vr6(A), 2wyt(A), 2wyz(A), 2wz0(A), 2wz5(A), 2wz6(A), 2xjk(A), 3cqp(A), 3kh3(A), 3kh4(A), 4a7g(A), 4a7q(A), 4a7s(A), 4a7t(A), 4a7u(A), 4a7v(A), 4b3e(A), 4bcy(A), 4ff9(A), 4oh2(A).

Cu1
 
4. Metal: CU1 × 10
PDB codes: 1n18(A), 1n19(A), 1ptz(A), 1pu0(A), 2gbt(A), 2gbv(A), 2zkw(A), 2zkx(A), 3t5w(A).


 
5. Ligand: MLI × 3
Malonate ion
PDB codes: 3cqp(A), 3h2p(A),


 
6. Ligand: CO3 × 1
Carbonate ion
PDB code: 4b3e(A).

_Cd
 
7. Metal: _CD × 1
PDB code: 1mfm(A).

 

 Cluster 5 contains 3 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 1
PDB code: 3hff(A).

_Cd
 
2. Metal: _CD × 2
PDB codes: 4bcy(A),


 
3. Ligand: 5FW × 1
Isoprenaline
PDB code: 4a7t(A).

 

 Cluster 6 contains 3 ligand types

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Ligand Description


 
1. Ligand: CPT × 2
cisplatin
Cisplatin
PDB codes: 3re0(A),


 
2. Ligand: CYS × 1
l-cysteine
PDB code: 4ff9(A).


 
3. Ligand: PS5 × 2
Pentasulfide-Sulfur
PDB codes: 3k91(A),

 

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