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PDBsum entry 2zdh

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2zdh calculated with MOLE 2.0 PDB id
2zdh
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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9 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.29 70.1 -0.66 -0.32 16.1 78 4 5 4 10 6 0 0  702 ADP B,703 ADP C,815 MG C
2 1.40 42.8 -1.09 -0.39 15.1 74 4 3 3 6 2 0 1  801 DAL A
3 1.40 45.4 -1.06 -0.36 13.2 76 3 4 3 5 2 1 1  801 DAL A
4 1.28 12.1 1.69 0.34 6.6 80 1 1 0 7 0 1 0  
5 1.49 10.2 0.08 -0.24 15.3 75 1 2 0 3 0 0 0  
6 1.42 7.8 -0.64 0.03 2.3 50 0 0 0 0 2 4 0  
7 1.72 5.4 1.56 0.15 3.9 73 0 1 0 3 0 0 0  
8 1.26 9.5 -1.67 -0.53 28.1 70 1 2 0 1 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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