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PDBsum entry 2yzm

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 2yzm calculated with MOLE 2.0 PDB id
2yzm
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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12 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.40 27.3 -1.43 -0.47 20.6 79 3 3 4 3 1 0 1  
2 1.39 31.2 -1.85 -0.66 23.3 84 4 5 3 5 0 0 1  
3 1.39 35.1 -1.38 -0.32 22.0 77 4 3 3 4 3 0 1  
4 1.31 26.9 -1.61 -0.48 19.9 71 2 2 3 4 3 0 0  
5 1.30 30.2 -1.18 -0.53 18.9 78 3 2 3 6 1 0 0  403 DAL C
6 1.38 21.0 0.53 -0.25 3.0 90 1 0 2 4 1 0 0  
7 1.49 7.8 -0.15 -0.25 2.3 73 0 0 1 3 0 1 0  
8 1.42 11.4 2.11 0.38 1.0 78 0 0 0 6 0 0 0  
9 2.20 4.1 1.24 0.50 3.0 65 1 0 0 4 1 0 0  
10 1.25 14.0 -0.56 -0.39 8.9 79 1 1 1 3 1 0 0  
11 3.11 2.2 0.61 -0.14 1.5 79 0 0 0 2 0 1 0  
12 1.44 12.9 -1.10 -0.48 11.5 88 1 1 2 1 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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