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PDBsum entry 2yy2

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protein ligands metals Protein-protein interface(s) links
Hydrolase PDB id
2yy2

 

 

 

 

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Contents
Protein chain
326 a.a. *
Ligands
IBM ×2
Metals
_ZN ×2
_MG ×2
Waters ×105
* Residue conservation analysis
PDB id:
2yy2
Name: Hydrolase
Title: Crystal structure of the human phosphodiesterase 9a catalytic domain complexed with ibmx
Structure: High-affinity cgmp-specific 3',5'-cyclic phosphodiesterase 9a. Chain: a, b. Fragment: catalytic domain, unp residues 241-566. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Other_details: e. Coli cell free system
Resolution:
2.80Å     R-factor:   0.206     R-free:   0.240
Authors: N.Handa,M.Shirouzu,T.Terada,K.Omori,J.Kotera,S.Yokoyama,Riken Structural Genomics/proteomics Initiative (Rsgi)
Key ref: N.Handa et al. Crystal structure of the human phosphodiesterase 9a catalytic domain. To be published, .
Date:
27-Apr-07     Release date:   30-Oct-07    
PROCHECK
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 Headers
 References

Protein chains
O76083  (PDE9A_HUMAN) -  High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
593 a.a.
326 a.a.
Key:    Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.3.1.4.35  - 3',5'-cyclic-GMP phosphodiesterase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: 3',5'-cyclic GMP + H2O = GMP + H+
3',5'-cyclic GMP
Bound ligand (Het Group name = IBM)
matches with 50.00% similarity
+ H2O
= GMP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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