PDBsum entry 2ypb Go to PDB code:  Tunnel analysis for: 2ypb calculated with MOLE 2.0 PDB id 2ypb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.13 19.2 -1.15 -0.13 16.8 85 3 0 3 2 1 0 0  DA 7 E DT 8 E 2 1.17 1.42 24.1 -0.39 0.25 18.7 75 3 0 3 3 3 0 0  DA 23 F DA 24 F DC 25 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.