PDBsum entry 2ynn Go to PDB code:  Tunnel analysis for: 2ynn calculated with MOLE 2.0 PDB id 2ynn Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.50 3.16 18.8 -3.08 -0.39 29.3 81 5 1 2 1 1 0 0   2 1.52 3.12 24.2 -3.30 -0.38 34.2 79 6 2 2 1 1 0 0   3 1.36 1.38 24.4 -1.19 -0.31 15.8 76 1 1 1 3 1 3 1   4 1.89 2.89 27.8 -1.51 -0.34 17.0 74 4 1 1 2 1 3 1   5 1.51 3.14 28.4 -2.56 -0.28 29.8 80 7 2 2 1 2 0 0   6 1.35 1.40 29.7 -1.76 -0.36 18.5 83 4 1 3 3 2 0 0   7 1.36 1.40 35.1 -1.77 -0.36 20.1 82 5 2 3 3 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.