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PDBsum entry 2yid

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2yid calculated with MOLE 2.0 PDB id
2yid
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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14 tunnels, coloured by tunnel radius 17 tunnels, coloured by tunnel radius 17 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.27 43.1 -0.55 -0.01 13.3 73 5 1 5 2 6 1 0  2001 TD7 B
2 1.48 47.6 -0.43 0.01 12.4 74 5 2 7 2 7 1 0  2001 TD7 A
3 1.40 47.7 -0.36 0.01 12.6 77 5 2 7 3 7 1 0  2001 TD7 C
4 1.76 19.2 -0.80 -0.57 4.4 86 1 1 4 4 0 2 0  
5 1.80 22.9 -1.18 -0.59 3.2 89 1 0 5 4 0 2 0  
6 1.76 28.4 -0.89 -0.33 5.8 81 1 1 4 3 1 2 0  
7 1.74 31.0 -1.10 -0.37 4.2 83 1 1 5 3 1 2 0  
8 1.72 19.4 -1.13 -0.65 4.8 86 1 1 4 4 0 2 0  
9 1.74 23.7 -1.31 -0.60 3.1 89 1 0 5 4 0 2 0  
10 1.65 27.4 -1.02 -0.35 6.5 81 1 1 4 3 1 2 0  
11 1.78 31.4 -1.37 -0.44 3.9 83 1 1 5 3 1 2 0  
12 1.77 36.9 -1.48 -0.47 9.4 79 2 1 5 3 1 3 0  
13 2.59 11.9 -1.74 -0.49 21.8 92 3 2 2 2 0 0 0  
14 2.60 12.3 -1.50 -0.49 17.5 88 3 2 2 2 0 1 0  
15 1.46 7.3 0.48 0.08 6.9 69 0 1 1 2 1 1 0  
16 1.93 13.4 -0.49 -0.08 11.3 89 2 1 4 2 0 0 0  
17 1.57 11.5 -1.18 -0.38 7.3 73 1 1 0 0 1 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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