PDBsum entry 2yfx Go to PDB code:  Tunnel analysis for: 2yfx calculated with MOLE 2.0 PDB id 2yfx Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.66 1.66 22.7 -0.72 -0.29 22.1 86 3 5 1 7 2 2 0  VGH 9000 A 2 1.58 1.66 24.0 -1.21 -0.26 25.8 82 2 7 0 4 4 3 0   3 1.27 1.45 24.9 -0.60 -0.27 21.4 86 3 5 1 8 2 2 0  VGH 9000 A 4 1.27 1.46 26.1 -1.18 -0.27 26.0 82 2 6 0 5 4 3 0   5 1.16 1.37 16.1 0.23 0.09 8.3 65 2 0 3 3 3 2 2   6 1.16 1.39 17.0 -0.22 -0.10 9.0 67 2 0 3 3 2 2 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.