PDBsum entry 2ydf Go to PDB code:  Pore analysis for: 2ydf calculated with MOLE 2.0 PDB id 2ydf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.77 3.16 59.3 -1.91 -0.18 24.8 80 9 3 4 3 2 1 0  IO3 2003 A 2 2.67 2.80 93.6 -1.85 -0.21 27.3 77 8 7 3 6 3 0 0  IO3 2003 A IO3 2004 A 3 2.22 2.38 104.7 -1.80 -0.33 21.9 83 9 5 6 6 2 1 0  IO3 2004 A 4 2.25 2.26 44.7 -3.20 -0.61 38.2 77 7 7 2 0 0 2 1   5 1.46 2.48 60.8 -0.49 0.07 19.0 78 7 5 2 11 1 2 1   6 2.00 2.16 65.3 -1.14 -0.20 24.5 77 8 4 1 2 1 1 2  IO3 2003 B 7 1.50 2.67 74.0 -0.82 -0.11 24.3 78 10 8 2 10 1 0 1   8 2.00 2.16 78.1 -1.11 -0.06 22.6 72 10 3 0 4 4 2 2  IO3 2003 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.